Browse Element(s) Details


OsAffx.16101.1.S1_at

Description tigr:9635.m00501
TID=OsAffx.16101.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0563011/11Glutaredoxin-like family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g05630OsAffx.16101.1.S1_at11/117+2676798..2677514Glutaredoxin-like family protein, expressed
LOC_Os07g05640Os.27403.1.A1_at11/117+2684737..2688160Sugar transporter family protein, expressed
LOC_Os07g05640OsAffx.16102.1.S1_x_at11/117+2684737..2688160Sugar transporter family protein, expressed
LOC_Os07g05650Os.54123.1.S1_at10/117+2688961..2691389MAGE-8 antigen, putative, expressed
LOC_Os07g05660OsAffx.5223.1.S1_at10/117+2693310..2696011hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0048441biological_processpetal development
GO:0048448biological_processstamen morphogenesis
GO:0048451biological_processpetal formation
GO:0048453biological_processsepal formation
GO:0048455biological_processstamen formation
GO:0005489molecular_functionelectron transporter activity
GO:0008794molecular_functionarsenate reductase (glutaredoxin) activity
GO:0030508molecular_functionthiol-disulfide exchange intermediate activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16101.1.S1_at--416--511Chr07:2676831..2676855 (25 bp)
ATCCACTACCAAAAAAGCCTTCCAT
LOC_Os07g05630
OsAffx.16101.1.S1_at--899--2411Chr07:2676841..2676865 (25 bp)
AAAAAAGCCTTCCATGTCGCCACTC
LOC_Os07g05630
OsAffx.16101.1.S1_at--97--3311Chr07:2676884..2676908 (25 bp)
CACACCAATTCTCCATCTATATATC
LOC_Os07g05630
OsAffx.16101.1.S1_at--573--4331Chr07:2676896..2676920 (25 bp)
CCATCTATATATCATCCACCTTCTT
LOC_Os07g05630
OsAffx.16101.1.S1_at--1034--31Chr07:2676939..2676963 (25 bp)
ATTGTGTGTTTGTGTTACATTGCAA
LOC_Os07g05630
OsAffx.16101.1.S1_at--53--6871Chr07:2676946..2676970 (25 bp)
GTTTGTGTTACATTGCAATCGTGCC
LOC_Os07g05630
OsAffx.16101.1.S1_at--598--6771Chr07:2676952..2676976 (25 bp)
GTTACATTGCAATCGTGCCATTTGA
LOC_Os07g05630
OsAffx.16101.1.S1_at--14--10731Chr07:2676958..2676982 (25 bp)
TTGCAATCGTGCCATTTGAAGAAGA
LOC_Os07g05630
OsAffx.16101.1.S1_at--28--4711Chr07:2677044..2677068 (25 bp)
GCGGCGATGATGTCGGTGTACGAGA
LOC_Os07g05630
OsAffx.16101.1.S1_at--1140--8611Chr07:2677099..2677123 (25 bp)
TGGTGGTGTTCAGCGCGAGCGGGTG
LOC_Os07g05630
OsAffx.16101.1.S1_at--803--7371Chr07:2677308..2677332 (25 bp)
GTGATGGCGTGCCACATCAATGGCA
LOC_Os07g05630
Target Sequence 
ATCCACTACCAAAAAAGCCTTCCATGTCGCCACTCCTTTGACCCCCCTCGCACCACACCAATTCTCCATCTATATATCAT
CCACCTTCTTCTTCCTCCTCTCATTGCCATTGTGTGTTTGTGTTACATTGCAATCGTGCCATTTGAAGAAGAGGAGGAGA
GGATGAGGATGCAGGTGGTGGAGACGGCGGCGGTGGAGGAGGAGGAGGCGGCGGCGGCGATGATGTCGGTGTACGAGAGG
GTGGCGAGGATGGCGAGCGGGAACGCGGTGGTGGTGTTCAGCGCGAGCGGGTGCTGCATGTGCCACGTCGTCAAGCGCCT
CCTCCTCGGCCTCGGCGTCGGCCCCGCCGTCTACGAGCTCGACCAGCTCGCCGCCGCCGCCGACATCCAGGCCGCGCTGT
CGCAGCTCCTCCCGCCGGGCCAGCCGCCGGTGCCCGTCGTGTTCGTCGGCGGCAGGCTCCTCGGCGGCGTCGAGAAGGTG
ATGGCGTGCCACATCAATGGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16101.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis