Browse Element(s) Details


OsAffx.16102.1.S1_x_at

Description tigr:9635.m00502
TID=OsAffx.16102.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0564011/11Sugar transporter family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g05630OsAffx.16101.1.S1_at11/117+2676798..2677514Glutaredoxin-like family protein, expressed
LOC_Os07g05640Os.27403.1.A1_at11/117+2684737..2688160Sugar transporter family protein, expressed
LOC_Os07g05640OsAffx.16102.1.S1_x_at11/117+2684737..2688160Sugar transporter family protein, expressed
LOC_Os07g05650Os.54123.1.S1_at10/117+2688961..2691389MAGE-8 antigen, putative, expressed
LOC_Os07g05660OsAffx.5223.1.S1_at10/117+2693310..2696011hypothetical protein
LOC_Os07g05670OsAffx.28292.1.S1_at11/117+2706056..2707763hypothetical protein
LOC_Os07g05680OsAffx.16103.1.S1_at10/117+2709560..2711284hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005886cellular_componentplasma membrane
GO:0016020cellular_componentmembrane
GO:0005351molecular_functionsugar porter activity
GO:0005354molecular_functiongalactose transporter activity
GO:0005355molecular_functionglucose transporter activity
GO:0005365molecular_functionmyo-inositol transporter activity
GO:0005403molecular_functionhydrogen:sugar symporter activity
GO:0015144molecular_functioncarbohydrate transporter activity
GO:0015145molecular_functionmonosaccharide transporter activity
GO:0015148molecular_functionD-xylose transporter activity
GO:0015168molecular_functionglycerol transporter activity
GO:0015575molecular_functionmannitol transporter activity
GO:0015591molecular_functionD-ribose transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16102.1.S1_x_at--880--3891Chr07:2687350..2687374 (25 bp)
CTGGGACTGCACGAGGTGTCTCAAG
LOC_Os07g05640
OsAffx.16102.1.S1_x_at--16--8131Chr07:2687353..2687377 (25 bp)
GGACTGCACGAGGTGTCTCAAGGCA
LOC_Os07g05640
OsAffx.16102.1.S1_x_at--83--7451Chr07:2687365..2687389 (25 bp)
GTGTCTCAAGGCAGCGGCGGCGTCG
LOC_Os07g05640
OsAffx.16102.1.S1_x_at--856--7571Chr07:2687561..2687585 (25 bp)
GGGCTGGCGCTGTACATCGCCGCCT
LOC_Os07g05640
OsAffx.16102.1.S1_x_at--732--3991Chr07:2687610..2687634 (25 bp)
CGTGGATCGTGAACTCGGAGGTCTA
LOC_Os07g05640
OsAffx.16102.1.S1_x_at--229--2011Chr07:2687622..2687646 (25 bp)
ACTCGGAGGTCTACCCGCTGCGGCA
LOC_Os07g05640
OsAffx.16102.1.S1_x_at--911--4091Chr07:2687673..2687697 (25 bp)
CGACGGCGAACTGGGTGTCGAACCT
LOC_Os07g05640
OsAffx.16102.1.S1_x_at--897--5411Chr07:2687692..2687716 (25 bp)
GAACCTGGCGGTGGCGCAGTCGTTC
LOC_Os07g05640
OsAffx.16102.1.S1_x_at--751--4231Chr07:2687775..2687799 (25 bp)
CCGTGGCGGCACTCGCGTTCGTGCT
LOC_Os07g05640
OsAffx.16102.1.S1_x_at--711--2851Chr07:2687819..2687843 (25 bp)
AAGGGCCTCCCCATCGAGGAGGTGG
LOC_Os07g05640
OsAffx.16102.1.S1_x_at--503--9091Chr07:2687850..2687874 (25 bp)
TGCTCGAGGGAAGGGAGCTCCGCCT
LOC_Os07g05640
Target Sequence 
CTGGGACTGCACGAGGTGTCTCAAGGCAGCGGCGGCGTCGGCGGGGTGTGGGTTCTGCGCGGCGGGCGGCGGCGACAAGC
TGCGCGCCGGGGCGTGCCTGGCGGCGGCGGCGGCGGCGTCGAACGCCACGGCTCGCGACGCGTGCCGCGGCGAGGGGAGG
GAGTGGTACACGCGGGGGTGCCCGAGCAGGTACGGGTGGCTGGCGATGGCGGGGCTGGCGCTGTACATCGCCGCCTTCTC
GCCGGGGATGGGGACGGTGCCGTGGATCGTGAACTCGGAGGTCTACCCGCTGCGGCACCGCGGCGTGTGCGGCGGCGCGG
CGGCGACGGCGAACTGGGTGTCGAACCTGGCGGTGGCGCAGTCGTTCCTGTCGCTGACGGACGCCATCGGGGCGGCGTGG
ACGTTCCTCATCTTCGGCGGGCTGTCCGTGGCGGCACTCGCGTTCGTGCTCGTCTGCGTGCCGGAGACCAAGGGCCTCCC
CATCGAGGAGGTGGAGAAGATGCTCGAGGGAAGGGAGCTCCGCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16102.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis