Browse Element(s) Details


OsAffx.28292.1.S1_at

Description tigr:9635.m00505
TID=OsAffx.28292.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0567011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g05640Os.27403.1.A1_at11/117+2684737..2688160Sugar transporter family protein, expressed
LOC_Os07g05640OsAffx.16102.1.S1_x_at11/117+2684737..2688160Sugar transporter family protein, expressed
LOC_Os07g05650Os.54123.1.S1_at10/117+2688961..2691389MAGE-8 antigen, putative, expressed
LOC_Os07g05660OsAffx.5223.1.S1_at10/117+2693310..2696011hypothetical protein
LOC_Os07g05670OsAffx.28292.1.S1_at11/117+2706056..2707763hypothetical protein
LOC_Os07g05680OsAffx.16103.1.S1_at10/117+2709560..2711284hypothetical protein
LOC_Os07g05690OsAffx.16104.1.S1_at11/117+2715501..2718131expressed protein
LOC_Os07g05700Os.4918.1.S1_at11/117+2720073..2721842expressed protein
LOC_Os07g05700OsAffx.16105.1.S1_at2/117+2720073..2721842expressed protein
LOC_Os07g05710OsAffx.16105.1.S1_at10/117+2726547..2728361hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28292.1.S1_at--1015--2951Chr07:2706687..2706711 (25 bp)
AATGGCCTATATCGTTGACGCCGAC
LOC_Os07g05670
OsAffx.28292.1.S1_at--1035--6651Chr07:2706700..2706724 (25 bp)
GTTGACGCCGACGAATTTGCCAAAA
LOC_Os07g05670
OsAffx.28292.1.S1_at--601--1091Chr07:2706804..2706828 (25 bp)
AGTGTCCGCTCCCTTTAGGAAGGCT
LOC_Os07g05670
OsAffx.28292.1.S1_at--252--5651Chr07:2706850..2706874 (25 bp)
GACAGCTCACCTCAAGATGATTTGG
LOC_Os07g05670
OsAffx.28292.1.S1_at--153--7951Chr07:2706873..2706897 (25 bp)
GGATTTGGAGGCTTCAGACACTTGG
LOC_Os07g05670
OsAffx.28292.1.S1_at--936--10291Chr07:2706917..2706941 (25 bp)
TTTCCTTCTTTGCTCTGTCATTGAT
LOC_Os07g05670
OsAffx.28292.1.S1_at--174--7991Chr07:2707050..2707074 (25 bp)
GGATGCGTTTATACCAGCTTGGAGT
LOC_Os07g05670
OsAffx.28292.1.S1_at--726--7051Chr07:2707224..2707248 (25 bp)
GTAAGCTTACTACCTATGCCCTTGT
LOC_Os07g05670
OsAffx.28292.1.S1_at--131--4951Chr07:2707269..2707293 (25 bp)
GCATTGACGCAGGATTCAGGCCGAA
LOC_Os07g05670
OsAffx.28292.1.S1_at--851--8411Chr07:2707287..2707311 (25 bp)
GGCCGAAAATTGTTCCGATCCTCAA
LOC_Os07g05670
OsAffx.28292.1.S1_at--967--10451Chr07:2707683..2707707 (25 bp)
TTAGCAGTCAGCGAGTCCGGAGGTT
LOC_Os07g05670
Target Sequence 
AATGGCCTATATCGTTGACGCCGACGAATTTGCCAAAAAATTCGCACACAGTGTCTTAGATGATGAGGAATTCAAGGCAA
AGCTAGATCAGACAGCAGATAGACTTGGTGCCATAGCAGTGTCCGCTCCCTTTAGGAAGGCTCAGGAGTGGTTTTTTGGT
AAAGACAGCTCACCTCAAGATGATTTGGATTTGGAGGCTTCAGACACTTGGGAAGACTGGGCAGTTTCCTTTTCCTTCTT
TGCTCTGTCATTGATCAGAGGAATGCCAGTTTATGAGAATGAACTGTGGATGCGTTTATACCAGCTTGGAGTTAGACGCA
ACAAGGAAAATGAAGAACTTCTGAACATTTTGGTTGCAGTAGGGTTGATATCAAAGAAGAAAAAGGGTAAGCTTACTACC
TATGCCCTTGTCGAAGAGCAATACAGGGAATGCATTGACGCAGGATTCAGGCCGAAAATTGTTCCGATCCTCAAGAAGGG
TATGTTCCGGGTGCTGAACTTTGGTTTCTTTAGCTTGAATTTAGCAGTCAGCGAGTCCGGAGGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28292.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis