Browse Element(s) Details


OsAffx.16105.1.S1_at

Description tigr:9635.m00509
TID=OsAffx.16105.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0571010/11hypothetical protein
LOC_Os07g057002/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g05670OsAffx.28292.1.S1_at11/117+2706056..2707763hypothetical protein
LOC_Os07g05680OsAffx.16103.1.S1_at10/117+2709560..2711284hypothetical protein
LOC_Os07g05690OsAffx.16104.1.S1_at11/117+2715501..2718131expressed protein
LOC_Os07g05700Os.4918.1.S1_at11/117+2720073..2721842expressed protein
LOC_Os07g05700OsAffx.16105.1.S1_at2/117+2720073..2721842expressed protein
LOC_Os07g05710OsAffx.16105.1.S1_at10/117+2726547..2728361hypothetical protein
LOC_Os07g05720OsAffx.16106.1.S1_at11/117+2749594..2754826TCP family transcription factor containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16105.1.S1_at--27--1292Chr07:2728137..2728161 (25 bp)
AGATCTGTTCTGTGTTCATGCCCAC
LOC_Os07g05710
OsAffx.16105.1.S1_at--632--9612Chr07:2728122..2728146 (25 bp)
TCATGCCCACCTTTCGTTTTCAAAA
LOC_Os07g05710
OsAffx.16105.1.S1_at--451--2391Chr07:2728095..2728115 (21 bp)
AAACTTTGAGCTCCCTATACGCCGG
LOC_Os07g05710
OsAffx.16105.1.S1_at--986--4271NONE
CCTATACGCCGGGACATCGAGGAGG
NONE
OsAffx.16105.1.S1_at--40--5951Chr07:2726697..2726721 (25 bp)
GATAAGGTACAACAGGGAATTCCAC
LOC_Os07g05710
OsAffx.16105.1.S1_at--352--3311Chr07:2726675..2726699 (25 bp)
CACAGAAGGTGTATCATGGCGTCTA
LOC_Os07g05710
OsAffx.16105.1.S1_at--793--7431Chr07:2726667..2726691 (25 bp)
GTGTATCATGGCGTCTATTGTAGTT
LOC_Os07g05710
OsAffx.16105.1.S1_at--475--6151Chr07:2726629..2726653 (25 bp)
GAGGTCTCTCTTGTGTCTGGTATGC
LOC_Os07g05710
OsAffx.16105.1.S1_at--405--9591Chr07:2726621..2726645 (25 bp)
TCTTGTGTCTGGTATGCTCGTAGCT
LOC_Os07g05710
OsAffx.16105.1.S1_at--768--8191Chr07:2726593..2726617 (25 bp)
GGAAGGCCCTCATGGAGCATGTTAC
LOC_Os07g05710
OsAffx.16105.1.S1_at--24--851Chr07:2726582..2726606 (25 bp)
ATGGAGCATGTTACCGGCTTCGAGG
LOC_Os07g05710
Target Sequence 
AGATCTGTTCTGTGTTCATGCCCACCTTTCGTTTTCAAAAAACCCCAAACTTTGAGCTCCCTATACGCCGGGACATCGAG
GAGGCGATAAGGTACAACAGGGAATTCCACAGAAGGTGTATCATGGCGTCTATTGTAGTTGGGGTCGGCCTTGGAGGTCT
CTCTTGTGTCTGGTATGCTCGTAGCTACAGGAAGGCCCTCATGGAGCATGTTACCGGCTTCGAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16105.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis