Browse Element(s) Details


OsAffx.16106.1.S1_at

Description tigr:9635.m00510
TID=OsAffx.16106.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=PlCYC4
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0572011/11TCP family transcription factor containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g05710OsAffx.16105.1.S1_at10/117+2726547..2728361hypothetical protein
LOC_Os07g05720OsAffx.16106.1.S1_at11/117+2749594..2754826TCP family transcription factor containing protein, expressed
LOC_Os07g05730OsAffx.16107.1.S1_at11/117+2754724..2755304expressed protein
LOC_Os07g05740OsAffx.16108.1.S1_at11/117+2755634..2759931leucine-rich repeat family protein, putative, expressed
LOC_Os07g05740Os.56726.1.S1_x_at1/117+2755634..2759931leucine-rich repeat family protein, putative, expressed
LOC_Os07g05750OsAffx.8469.1.S1_x_at1/117+2764764..2766445retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g05750OsAffx.28492.1.S1_at1/117+2764764..2766445retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g05760OsAffx.23212.1.S1_at2/117+2770385..2771359hypothetical protein
LOC_Os07g05770OsAffx.22940.2.S1_s_at10/117+2772101..2779512transposon protein, putative, Mutator sub-class
LOC_Os07g05770OsAffx.22940.5.S1_x_at9/117+2772101..2779512transposon protein, putative, Mutator sub-class
LOC_Os07g05770Os.35344.3.S1_x_at8/117+2772101..2779512transposon protein, putative, Mutator sub-class
LOC_Os07g05770OsAffx.22940.3.S1_x_at8/117+2772101..2779512transposon protein, putative, Mutator sub-class
LOC_Os07g05770Os.35344.18.S1_x_at8/117+2772101..2779512transposon protein, putative, Mutator sub-class
LOC_Os07g05770OsAffx.22940.2.S1_at6/117+2772101..2779512transposon protein, putative, Mutator sub-class
LOC_Os07g05770OsAffx.22940.1.S1_s_at6/117+2772101..2779512transposon protein, putative, Mutator sub-class
LOC_Os07g05770OsAffx.22940.5.S1_at5/117+2772101..2779512transposon protein, putative, Mutator sub-class
LOC_Os07g05770OsAffx.31552.2.S1_at1/117+2772101..2779512transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0048366biological_processleaf development
GO:0009507cellular_componentchloroplast
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16106.1.S1_at--902--4151Chr07:2750546..2750570 (25 bp)
CGCCGCATACGCAGCCGCGGAAATC
LOC_Os07g05720
OsAffx.16106.1.S1_at--108--1511Chr07:2750693..2750717 (25 bp)
AGCACCACGCGGAGATGACGCACTA
LOC_Os07g05720
OsAffx.16106.1.S1_at--443--1831Chr07:2750699..2750723 (25 bp)
ACGCGGAGATGACGCACTACTCGTT
LOC_Os07g05720
OsAffx.16106.1.S1_at--405--8051Chr07:2750703..2750727 (25 bp)
GGAGATGACGCACTACTCGTTCGAC
LOC_Os07g05720
OsAffx.16106.1.S1_at--1145--1291Chr07:2750705..2750729 (25 bp)
AGATGACGCACTACTCGTTCGACCA
LOC_Os07g05720
OsAffx.16106.1.S1_at--38--5111Chr07:2750712..2750736 (25 bp)
GCACTACTCGTTCGACCACTTCATG
LOC_Os07g05720
OsAffx.16106.1.S1_at--463--3491Chr07:2750811..2750835 (25 bp)
CATGTCCTCGGGTCTTGTGGGTGTC
LOC_Os07g05720
OsAffx.16106.1.S1_at--495--7251Chr07:2750814..2750838 (25 bp)
GTCCTCGGGTCTTGTGGGTGTCCAC
LOC_Os07g05720
OsAffx.16106.1.S1_at--250--3791Chr07:2750817..2750841 (25 bp)
CTCGGGTCTTGTGGGTGTCCACAGT
LOC_Os07g05720
OsAffx.16106.1.S1_at--858--10531Chr07:2750852..2750876 (25 bp)
TTCAGTCCAATTCGCAGTCTCACCT
LOC_Os07g05720
OsAffx.16106.1.S1_at--764--3431Chr07:2750929..2750953 (25 bp)
CAGAGGCTGTCTGCTCCGCTGGATG
LOC_Os07g05720
Target Sequence 
CGCCGCATACGCAGCCGCGGAAATCCGCCGCGGGCCATCACTCCGCGATGCCGCACACCTTCGCATCACCCGCTCCCCAC
CTCGCCAACATCACCCCCATCGCCATGGCGCCCGCGCAGCACTTCACCCTCACACCCGCCGCCGCCGAGCACCACGCGGA
GATGACGCACTACTCGTTCGACCACTTCATGCCCGTCCACGCGGCAGCAGCGGCGGCGGCGGCGGCCTCCACCCCGGCCG
GCGGCGACTACAACCTCAACTTCTCCATGTCCTCGGGTCTTGTGGGTGTCCACAGTAGGGGGACCCTTCAGTCCAATTCG
CAGTCTCACCTCTCCAGCCATCACCACCACCATCACCAGCAACAGCAGCAGCAGCAGCAGCTGCAGAGGCTGTCTGCTCC
GCTGGATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16106.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis