Browse Element(s) Details


OsAffx.16107.1.S1_at

Description tigr:9635.m00511
TID=OsAffx.16107.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0573011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g05720OsAffx.16106.1.S1_at11/117+2749594..2754826TCP family transcription factor containing protein, expressed
LOC_Os07g05730OsAffx.16107.1.S1_at11/117+2754724..2755304expressed protein
LOC_Os07g05740OsAffx.16108.1.S1_at11/117+2755634..2759931leucine-rich repeat family protein, putative, expressed
LOC_Os07g05740Os.56726.1.S1_x_at1/117+2755634..2759931leucine-rich repeat family protein, putative, expressed
LOC_Os07g05750OsAffx.8469.1.S1_x_at1/117+2764764..2766445retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g05750OsAffx.28492.1.S1_at1/117+2764764..2766445retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g05760OsAffx.23212.1.S1_at2/117+2770385..2771359hypothetical protein
LOC_Os07g05770OsAffx.22940.2.S1_s_at10/117+2772101..2779512transposon protein, putative, Mutator sub-class
LOC_Os07g05770OsAffx.22940.5.S1_x_at9/117+2772101..2779512transposon protein, putative, Mutator sub-class
LOC_Os07g05770Os.35344.3.S1_x_at8/117+2772101..2779512transposon protein, putative, Mutator sub-class
LOC_Os07g05770OsAffx.22940.3.S1_x_at8/117+2772101..2779512transposon protein, putative, Mutator sub-class
LOC_Os07g05770Os.35344.18.S1_x_at8/117+2772101..2779512transposon protein, putative, Mutator sub-class
LOC_Os07g05770OsAffx.22940.2.S1_at6/117+2772101..2779512transposon protein, putative, Mutator sub-class
LOC_Os07g05770OsAffx.22940.1.S1_s_at6/117+2772101..2779512transposon protein, putative, Mutator sub-class
LOC_Os07g05770OsAffx.22940.5.S1_at5/117+2772101..2779512transposon protein, putative, Mutator sub-class
LOC_Os07g05770OsAffx.31552.2.S1_at1/117+2772101..2779512transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16107.1.S1_at--675--2311Chr07:2755200..2755224 (25 bp)
AAAGAACTGCTCACCCAAAGTCCAC
LOC_Os07g05730
OsAffx.16107.1.S1_at--22--1151Chr07:2755182..2755206 (25 bp)
AGTCCACATGTAACATAGCAGCTTT
LOC_Os07g05730
OsAffx.16107.1.S1_at--131--291Chr07:2755168..2755192 (25 bp)
ATAGCAGCTTTCACAAAGCTTTGGA
LOC_Os07g05730
OsAffx.16107.1.S1_at--556--10231Chr07:2755149..2755173 (25 bp)
TTTGGAGATCCAACACATGTGTGAA
LOC_Os07g05730
OsAffx.16107.1.S1_at--92--7351Chr07:2754843..2755153 (25 bp)
GTGAACTTTGATTTGGCAACCGATC
LOC_Os07g05730
OsAffx.16107.1.S1_at--509--8511Chr07:2754830..2754853 (24 bp)
TGGCAACCGATCTCACAGTGTCAAA
LOC_Os07g05730
OsAffx.16107.1.S1_at--967--6411Chr07:2754822..2754846 (25 bp)
GATCTCACAGTGTCAAAAGAGGCAA
LOC_Os07g05730
OsAffx.16107.1.S1_at--892--8231Chr07:2754802..2754826 (25 bp)
GGCAAAGAACCAATCCAGTCCAGAG
LOC_Os07g05730
OsAffx.16107.1.S1_at--471--2651Chr07:2754795..2754819 (25 bp)
AACCAATCCAGTCCAGAGCCGCATG
LOC_Os07g05730
OsAffx.16107.1.S1_at--847--5871Chr07:2754780..2754804 (25 bp)
GAGCCGCATGCATCCATTGACATAG
LOC_Os07g05730
OsAffx.16107.1.S1_at--585--4971Chr07:2754771..2754795 (25 bp)
GCATCCATTGACATAGTTTACAACA
LOC_Os07g05730
Target Sequence 
AAAGAACTGCTCACCCAAAGTCCACATGTAACATAGCAGCTTTCACAAAGCTTTGGAGATCCAACACATGTGTGAACTTT
GATTTGGCAACCGATCTCACAGTGTCAAAAGAGGCAAAGAACCAATCCAGTCCAGAGCCGCATGCATCCATTGACATAGT
TTACAACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16107.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis