Browse Element(s) Details


OsAffx.16108.1.S1_at

Description tigr:9635.m00512
TID=OsAffx.16108.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to leucine-rich receptor-like protein kinase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0574011/11leucine-rich repeat family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g05720OsAffx.16106.1.S1_at11/117+2749594..2754826TCP family transcription factor containing protein, expressed
LOC_Os07g05730OsAffx.16107.1.S1_at11/117+2754724..2755304expressed protein
LOC_Os07g05740OsAffx.16108.1.S1_at11/117+2755634..2759931leucine-rich repeat family protein, putative, expressed
LOC_Os07g05740Os.56726.1.S1_x_at1/117+2755634..2759931leucine-rich repeat family protein, putative, expressed
LOC_Os07g05750OsAffx.8469.1.S1_x_at1/117+2764764..2766445retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g05750OsAffx.28492.1.S1_at1/117+2764764..2766445retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g05760OsAffx.23212.1.S1_at2/117+2770385..2771359hypothetical protein
LOC_Os07g05770OsAffx.22940.2.S1_s_at10/117+2772101..2779512transposon protein, putative, Mutator sub-class
LOC_Os07g05770OsAffx.22940.5.S1_x_at9/117+2772101..2779512transposon protein, putative, Mutator sub-class
LOC_Os07g05770Os.35344.3.S1_x_at8/117+2772101..2779512transposon protein, putative, Mutator sub-class
LOC_Os07g05770OsAffx.22940.3.S1_x_at8/117+2772101..2779512transposon protein, putative, Mutator sub-class
LOC_Os07g05770Os.35344.18.S1_x_at8/117+2772101..2779512transposon protein, putative, Mutator sub-class
LOC_Os07g05770OsAffx.22940.2.S1_at6/117+2772101..2779512transposon protein, putative, Mutator sub-class
LOC_Os07g05770OsAffx.22940.1.S1_s_at6/117+2772101..2779512transposon protein, putative, Mutator sub-class
LOC_Os07g05770OsAffx.22940.5.S1_at5/117+2772101..2779512transposon protein, putative, Mutator sub-class
LOC_Os07g05770OsAffx.31552.2.S1_at1/117+2772101..2779512transposon protein, putative, Mutator sub-class
LOC_Os07g05780NANA7+2781567..2783807hypothetical protein
LOC_Os07g05790NANA7+2784882..2786723retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16108.1.S1_at--965--2891Chr07:2757155..2757179 (25 bp)
AAGGTCTGAGGTATCTTCACAGTGA
LOC_Os07g05740
OsAffx.16108.1.S1_at--363--2231Chr07:2757009..2757033 (25 bp)
ACAATGTCTGCTATTGCCGGTTCAT
LOC_Os07g05740
OsAffx.16108.1.S1_at--960--5071Chr07:2756806..2756826 (21 bp)
GCACCAGAGTATGCTTTTACCATGA
LOC_Os07g05740
OsAffx.16108.1.S1_at--1060--1111Chr07:2756729..2756753 (25 bp)
AGTGACGGGACAATCTCCGATTCAA
LOC_Os07g05740
OsAffx.16108.1.S1_at--539--9291Chr07:2756714..2756738 (25 bp)
TCCGATTCAACCTCTTGAGCAAGGA
LOC_Os07g05740
OsAffx.16108.1.S1_at--472--5651Chr07:2756626..2756650 (25 bp)
GACAGCAGGCTGAATCTGAACTCAA
LOC_Os07g05740
OsAffx.16108.1.S1_at--764--6591Chr07:2756567..2756591 (25 bp)
GATTGCATTGTTCTGCACCAGCGAG
LOC_Os07g05740
OsAffx.16108.1.S1_at--298--1631Chr07:2756548..2756572 (25 bp)
AGCGAGTCGCCACTAGATAGGCCTA
LOC_Os07g05740
OsAffx.16108.1.S1_at--118--6491Chr07:2756533..2756557 (25 bp)
GATAGGCCTAGCATGCGTGAAGTAA
LOC_Os07g05740
OsAffx.16108.1.S1_at--973--6351Chr07:2756494..2756518 (25 bp)
GATGCCAGAGCCTCTGCTTATGATT
LOC_Os07g05740
OsAffx.16108.1.S1_at--977--10431Chr07:2756477..2756501 (25 bp)
TTATGATTCTTTTTCGTCTCCAGCA
LOC_Os07g05740
Target Sequence 
AAGGTCTGAGGTATCTTCACAGTGACTGCAAACCGAAGGTGATTCACCGTGACATAAAATCGAACAACATATTGCTTGAT
GAAATGATGGAGGCTCATGTAGGGGACTTTGGCTTGGCAAAACTGATTGATATTTCCAACTCCAGAACAATGTCTGCTAT
TGCCGGTTCATATGGCTACATTGCACCAGAGTATGCTTTTACCATGAAGGTGACTGAAAAATGTGACATTTATAGCTTCG
GGGTAGTCTTGTTGGAGCTAGTGACGGGACAATCTCCGATTCAACCTCTTGAGCAAGGAGGGGATCTTGTCAATCTAGTG
AGGCGGATGACAAACAGTTCGACAACAAATTCTGAAATTTTTGACAGCAGGCTGAATCTGAACTCAAGGAGGGTTCTGGA
AGAAATTTCACTGGTTCTGAAGATTGCATTGTTCTGCACCAGCGAGTCGCCACTAGATAGGCCTAGCATGCGTGAAGTAA
TATCAATGCTGATGGATGCCAGAGCCTCTGCTTATGATTCTTTTTCGTCTCCAGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16108.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis