Browse Element(s) Details


OsAffx.23212.1.S1_at

Description tigr:9629.m01165
TID=OsAffx.23212.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g057602/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g05720OsAffx.16106.1.S1_at11/117+2749594..2754826TCP family transcription factor containing protein, expressed
LOC_Os07g05730OsAffx.16107.1.S1_at11/117+2754724..2755304expressed protein
LOC_Os07g05740OsAffx.16108.1.S1_at11/117+2755634..2759931leucine-rich repeat family protein, putative, expressed
LOC_Os07g05740Os.56726.1.S1_x_at1/117+2755634..2759931leucine-rich repeat family protein, putative, expressed
LOC_Os07g05750OsAffx.8469.1.S1_x_at1/117+2764764..2766445retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g05750OsAffx.28492.1.S1_at1/117+2764764..2766445retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g05760OsAffx.23212.1.S1_at2/117+2770385..2771359hypothetical protein
LOC_Os07g05770OsAffx.22940.2.S1_s_at10/117+2772101..2779512transposon protein, putative, Mutator sub-class
LOC_Os07g05770OsAffx.22940.5.S1_x_at9/117+2772101..2779512transposon protein, putative, Mutator sub-class
LOC_Os07g05770Os.35344.3.S1_x_at8/117+2772101..2779512transposon protein, putative, Mutator sub-class
LOC_Os07g05770OsAffx.22940.3.S1_x_at8/117+2772101..2779512transposon protein, putative, Mutator sub-class
LOC_Os07g05770Os.35344.18.S1_x_at8/117+2772101..2779512transposon protein, putative, Mutator sub-class
LOC_Os07g05770OsAffx.22940.2.S1_at6/117+2772101..2779512transposon protein, putative, Mutator sub-class
LOC_Os07g05770OsAffx.22940.1.S1_s_at6/117+2772101..2779512transposon protein, putative, Mutator sub-class
LOC_Os07g05770OsAffx.22940.5.S1_at5/117+2772101..2779512transposon protein, putative, Mutator sub-class
LOC_Os07g05770OsAffx.31552.2.S1_at1/117+2772101..2779512transposon protein, putative, Mutator sub-class
LOC_Os07g05780NANA7+2781567..2783807hypothetical protein
LOC_Os07g05790NANA7+2784882..2786723retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g05800OsAffx.28293.1.S1_at10/117+2789750..2790857Lactoylglutathione lyase, putative, expressed
LOC_Os07g05810Os.8946.1.S1_at11/117+2792436..2795656expressed protein
LOC_Os07g05820Os.51287.1.S1_at11/117+2795991..2799663expressed protein
LOC_Os07g05820Os.7873.1.S1_at11/117+2795991..2799663expressed protein
LOC_Os07g05820Os.7873.1.S1_x_at11/117+2795991..2799663expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23212.1.S1_at--472--6491NONE
GATAGAAGAGAAGTGGTCGCCTACC
NONE
OsAffx.23212.1.S1_at--983--14545Chr12:24368541..24368560 (20 bp)
AGAAGAGAAGTGGTCGCCTACCGCC
NONE
OsAffx.23212.1.S1_at--439--27753Chr12:24368541..24368562 (22 bp)
AAGAGAAGTGGTCGCCTACCGCCCT
NONE
OsAffx.23212.1.S1_at--637--14559Chr12:24368541..24368565 (25 bp)
AGAAGTGGTCGCCTACCGCCCTCTG
NONE
OsAffx.23212.1.S1_at--389--3695Chr05:22332531..22332555 (25 bp)
CTACCGCCCTCTGGGAGGACGATTT
NONE
OsAffx.23212.1.S1_at--906--2271Chr01:6551764..6551788 (25 bp)
AAATCGTCATCCCAGAGGGTGGCGA
NONE
OsAffx.23212.1.S1_at--698--3011Chr01:6551763..6551787 (25 bp)
AATCGTCATCCCAGAGGGTGGCGAA
NONE
OsAffx.23212.1.S1_at--258--511Chr01:6551762..6551786 (25 bp)
ATCGTCATCCCAGAGGGTGGCGAAA
NONE
OsAffx.23212.1.S1_at--144--4031Chr01:6551760..6551784 (25 bp)
CGTCATCCCAGAGGGTGGCGAAAGT
NONE
OsAffx.23212.1.S1_at--1066--3333Chr03:30186134..30186158 (25 bp)
CATCCCAGAGGGTGGCGAAAGTGAC
NONE
OsAffx.23212.1.S1_at--312--7534Chr11:2984267..2984288 (22 bp)
GTGGCGAAAGTGACGTGGCAGACGG
NONE
Target Sequence 
GATAGAAGAGAAGTGGTCGCCTACCGCCCTCTGGGAGGACGATTTTTAAAAATCGTCATCCCAGAGGGTGGCGAAAGTGA
CGTGGCAGACGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23212.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis