Browse Element(s) Details


Os.4918.1.S1_at

Description gb:AK105339.1
DB_XREF= gi:32990548
TID=Os.4918.1
CNT=17
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.4918 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-118-G04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-118-G04, full insert sequence.
FL= gb:AK105339.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0570011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g05660OsAffx.5223.1.S1_at10/117+2693310..2696011hypothetical protein
LOC_Os07g05670OsAffx.28292.1.S1_at11/117+2706056..2707763hypothetical protein
LOC_Os07g05680OsAffx.16103.1.S1_at10/117+2709560..2711284hypothetical protein
LOC_Os07g05690OsAffx.16104.1.S1_at11/117+2715501..2718131expressed protein
LOC_Os07g05700Os.4918.1.S1_at11/117+2720073..2721842expressed protein
LOC_Os07g05700OsAffx.16105.1.S1_at2/117+2720073..2721842expressed protein
LOC_Os07g05710OsAffx.16105.1.S1_at10/117+2726547..2728361hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4918.1.S1_at--915--2491Chr07:2720464..2720488 (25 bp)
AACAGGCTCCACAAGCGGTGTTTAA
LOC_Os07g05700
Os.4918.1.S1_at--606--3171Chr07:2720441..2720465 (25 bp)
AATTGGGTCTGTGTTTGCTGGGTTC
LOC_Os07g05700
Os.4918.1.S1_at--506--9331Chr07:2720403..2720427 (25 bp)
TCGCTTGTGCCTGGTATACTCGTAG
LOC_Os07g05700
Os.4918.1.S1_at--182--8031Chr07:2720360..2720384 (25 bp)
GGAGCATTTTGACAACCCGATCGTT
LOC_Os07g05700
Os.4918.1.S1_at--464--6391Chr07:2720342..2720366 (25 bp)
GATCGTTTGGATGCCGCCGTATTCA
LOC_Os07g05700
Os.4918.1.S1_at--472--2511Chr07:2720318..2720342 (25 bp)
AACATCTTCGCCTGAGTAGCCTGGG
LOC_Os07g05700
Os.4918.1.S1_at--652--1571Chr07:2720283..2720307 (25 bp)
AGCTCACTTATCCTTTTGTTGCCAT
LOC_Os07g05700
Os.4918.1.S1_at--166--9771Chr07:2720254..2720278 (25 bp)
TAATGTTTGACTCTGGCGTATGGCA
LOC_Os07g05700
Os.4918.1.S1_at--918--9011Chr07:2720210..2720234 (25 bp)
TGCAAGAGCTAGCTAGCGCACACTC
LOC_Os07g05700
Os.4918.1.S1_at--439--4591Chr07:2720195..2720219 (25 bp)
GCGCACACTCTAGCTTACAGTATGT
LOC_Os07g05700
Os.4918.1.S1_at--461--4931Chr07:2720170..2720194 (25 bp)
GCTTGTGCCGTGTTATGTTAGACCA
LOC_Os07g05700
Target Sequence 
AACAGGCTCCACAAGCGGTGTTTAATTGGGTCTGTGTTTGCTGGGTTCGGCCTTGGAGGTCTCGCTTGTGCCTGGTATAC
TCGTAGCTACAGGAAGGCCCTCAAGGAGCATTTTGACAACCCGATCGTTTGGATGCCGCCGTATTCAACATCTTCGCCTG
AGTAGCCTGGGTTGGGGATCCAGCTCACTTATCCTTTTGTTGCCATGTAATAATGTTTGACTCTGGCGTATGGCATGTGA
TTTGGGGTAATGCTTGCAAGAGCTAGCTAGCGCACACTCTAGCTTACAGTATGTGCTTGTGCCGTGTTATGTTAGACCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4918.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis