Browse Element(s) Details


OsAffx.16104.1.S1_at

Description tigr:9635.m00507
TID=OsAffx.16104.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0569011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g05650Os.54123.1.S1_at10/117+2688961..2691389MAGE-8 antigen, putative, expressed
LOC_Os07g05660OsAffx.5223.1.S1_at10/117+2693310..2696011hypothetical protein
LOC_Os07g05670OsAffx.28292.1.S1_at11/117+2706056..2707763hypothetical protein
LOC_Os07g05680OsAffx.16103.1.S1_at10/117+2709560..2711284hypothetical protein
LOC_Os07g05690OsAffx.16104.1.S1_at11/117+2715501..2718131expressed protein
LOC_Os07g05700Os.4918.1.S1_at11/117+2720073..2721842expressed protein
LOC_Os07g05700OsAffx.16105.1.S1_at2/117+2720073..2721842expressed protein
LOC_Os07g05710OsAffx.16105.1.S1_at10/117+2726547..2728361hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16104.1.S1_at--730--191Chr07:2716148..2716172 (25 bp)
ATTTCTCATGGCTTCAGTGGTCACT
LOC_Os07g05690
OsAffx.16104.1.S1_at--140--1111Chr07:2716163..2716187 (25 bp)
AGTGGTCACTATTTCTTTTGGTGTC
LOC_Os07g05690
OsAffx.16104.1.S1_at--1004--9751Chr07:2716223..2716247 (25 bp)
TAATGGGTTTCTCAAGGGTTTCATC
LOC_Os07g05690
OsAffx.16104.1.S1_at--269--9391Chr07:2716249..2716273 (25 bp)
TCGATTTCCTTGATGATCCTACCAT
LOC_Os07g05690
OsAffx.16104.1.S1_at--879--711Chr07:2716261..2716285 (25 bp)
ATGATCCTACCATTTCCGTCAAAAT
LOC_Os07g05690
OsAffx.16104.1.S1_at--170--1891Chr07:2716294..2716318 (25 bp)
ACGTTGATGATTTGGCCGGCAGTGC
LOC_Os07g05690
OsAffx.16104.1.S1_at--696--5011Chr07:2716317..2716341 (25 bp)
GCAGTGGAGTCCATTAACCCAATCA
LOC_Os07g05690
OsAffx.16104.1.S1_at--816--2811Chr07:2716343..2716367 (25 bp)
AAGATTTGTCCACTGGTTGTCTGGA
LOC_Os07g05690
OsAffx.16104.1.S1_at--751--871Chr07:2716374..2716398 (25 bp)
AGGCCTGCTCATTATCAGAAGCTCA
LOC_Os07g05690
OsAffx.16104.1.S1_at--598--5731Chr07:2716425..2716449 (25 bp)
GACTGGTCATCTATCCTTGCATTTG
LOC_Os07g05690
OsAffx.16104.1.S1_at--549--3631Chr07:2716440..2716464 (25 bp)
CTTGCATTTGCCGTCAACTCCATTG
LOC_Os07g05690
Target Sequence 
ATTTCTCATGGCTTCAGTGGTCACTATTTCTTTTGGTGTCTACTTTTTTGGGGTTTTCACTGGGCGAGTAGATGTTAATG
GGTTTCTCAAGGGTTTCATCATCGATTTCCTTGATGATCCTACCATTTCCGTCAAAATGCACGATTACGTTGATGATTTG
GCCGGCAGTGCAGTGGAGTCCATTAACCCAATCAAAAGATTTGTCCACTGGTTGTCTGGACAACCCAGGCCTGCTCATTA
TCAGAAGCTCAATGAGGAAGTCCTTAACTATTATACCGACTGGTCATCTATCCTTGCATTTGCCGTCAACTCCATTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16104.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis