Browse Element(s) Details


OsAffx.16103.1.S1_at

Description tigr:9635.m00506
TID=OsAffx.16103.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0568010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g05640Os.27403.1.A1_at11/117+2684737..2688160Sugar transporter family protein, expressed
LOC_Os07g05640OsAffx.16102.1.S1_x_at11/117+2684737..2688160Sugar transporter family protein, expressed
LOC_Os07g05650Os.54123.1.S1_at10/117+2688961..2691389MAGE-8 antigen, putative, expressed
LOC_Os07g05660OsAffx.5223.1.S1_at10/117+2693310..2696011hypothetical protein
LOC_Os07g05670OsAffx.28292.1.S1_at11/117+2706056..2707763hypothetical protein
LOC_Os07g05680OsAffx.16103.1.S1_at10/117+2709560..2711284hypothetical protein
LOC_Os07g05690OsAffx.16104.1.S1_at11/117+2715501..2718131expressed protein
LOC_Os07g05700Os.4918.1.S1_at11/117+2720073..2721842expressed protein
LOC_Os07g05700OsAffx.16105.1.S1_at2/117+2720073..2721842expressed protein
LOC_Os07g05710OsAffx.16105.1.S1_at10/117+2726547..2728361hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16103.1.S1_at--439--1271Chr07:2711133..2711157 (25 bp)
AGATCGTTCGTTTCGATCGACCAAG
LOC_Os07g05680
OsAffx.16103.1.S1_at--1156--2831Chr07:2710487..2710511 (25 bp)
AAGTACTACAGAGCTTGCGTCTTCC
LOC_Os07g05680
OsAffx.16103.1.S1_at--701--5911Chr07:2710477..2710501 (25 bp)
GAGCTTGCGTCTTCCATGAAGGTTG
LOC_Os07g05680
OsAffx.16103.1.S1_at--671--8111Chr07:2710442..2710466 (25 bp)
GGACGAGACAATTCGACAGCTACAT
LOC_Os07g05680
OsAffx.16103.1.S1_at--1129--1031Chr07:2710214..2710238 (25 bp)
AGGTGTCTCCTGTGTCCGGTATACT
LOC_Os07g05680
OsAffx.16103.1.S1_at--197--7451Chr07:2710203..2710227 (25 bp)
GTGTCCGGTATACTCGTAGTTACAG
LOC_Os07g05680
OsAffx.16103.1.S1_at--1143--4531Chr07:2710174..2710198 (25 bp)
GCCCTCAGGGAGTATTATGTTGTCG
LOC_Os07g05680
OsAffx.16103.1.S1_at--1149--10111Chr07:2710159..2710183 (25 bp)
TATGTTGTCGGCTTGGAGATGGAAA
LOC_Os07g05680
OsAffx.16103.1.S1_at--927--2511NONE
AACTTCAACTTTAGCTCTTATTTCA
NONE
OsAffx.16103.1.S1_at--3--191Chr07:2709609..2709633 (25 bp)
ATTTCAAGTTGCAGTCGTCTTTCCT
LOC_Os07g05680
OsAffx.16103.1.S1_at--637--10291Chr07:2709590..2709614 (25 bp)
TTTCCTCGTCCCTAGATTTTGCAGT
LOC_Os07g05680
Target Sequence 
AGATCGTTCGTTTCGATCGACCAAGATCGGGAAAGTACACCAATGGAAGTACTACAGAGCTTGCGTCTTCCATGAAGGTT
GTGAAGAATGTGGACGAGACAATTCGACAGCTACATGAAGAAGTAGCTAAAATGGAAGCTGCAAGCAAGGAAATAGCGGA
GATAATAAGGTACAACAGGTTCCACAGAAGGTGTATAATGGGGTCTGTTGTCCTTGGGGTGGGTCTTGCAGGTGTCTCCT
GTGTCCGGTATACTCGTAGTTACAGGAAGGCCCTCAGGGAGTATTATGTTGTCGGCTTGGAGATGGAAAACAACTTCAAC
TTTAGCTCTTATTTCAAGTTGCAGTCGTCTTTCCTCGTCCCTAGATTTTGCAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16103.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis