Browse Element(s) Details


Os.27403.1.A1_at

Description gb:CB671547
DB_XREF= gi:29675272
DB_XREF=OSJNEe05C24.r
CLONE=OSJNEe05C24
TID=Os.27403.1
CNT=4
FEA=EST
TIER=ConsEnd
STK=3
UG=Os.27403 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_174313.1 (A.thaliana) hypothetical protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0564011/11Sugar transporter family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g05630OsAffx.16101.1.S1_at11/117+2676798..2677514Glutaredoxin-like family protein, expressed
LOC_Os07g05640Os.27403.1.A1_at11/117+2684737..2688160Sugar transporter family protein, expressed
LOC_Os07g05640OsAffx.16102.1.S1_x_at11/117+2684737..2688160Sugar transporter family protein, expressed
LOC_Os07g05650Os.54123.1.S1_at10/117+2688961..2691389MAGE-8 antigen, putative, expressed
LOC_Os07g05660OsAffx.5223.1.S1_at10/117+2693310..2696011hypothetical protein
LOC_Os07g05670OsAffx.28292.1.S1_at11/117+2706056..2707763hypothetical protein
LOC_Os07g05680OsAffx.16103.1.S1_at10/117+2709560..2711284hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0005886cellular_componentplasma membrane
GO:0016020cellular_componentmembrane
GO:0005351molecular_functionsugar porter activity
GO:0005354molecular_functiongalactose transporter activity
GO:0005355molecular_functionglucose transporter activity
GO:0005365molecular_functionmyo-inositol transporter activity
GO:0005403molecular_functionhydrogen:sugar symporter activity
GO:0015144molecular_functioncarbohydrate transporter activity
GO:0015145molecular_functionmonosaccharide transporter activity
GO:0015148molecular_functionD-xylose transporter activity
GO:0015168molecular_functionglycerol transporter activity
GO:0015575molecular_functionmannitol transporter activity
GO:0015591molecular_functionD-ribose transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27403.1.A1_at--337--8671Chr07:2687946..2687970 (25 bp)
TGTGACACGACACGAGGCCTGTTTA
LOC_Os07g05640
Os.27403.1.A1_at--346--5631Chr07:2687949..2687973 (25 bp)
GACACGACACGAGGCCTGTTTATTT
LOC_Os07g05640
Os.27403.1.A1_at--476--5631Chr07:2687954..2687978 (25 bp)
GACACGAGGCCTGTTTATTTAGCGT
LOC_Os07g05640
Os.27403.1.A1_at--368--6211Chr07:2687959..2687983 (25 bp)
GAGGCCTGTTTATTTAGCGTTTTGA
LOC_Os07g05640
Os.27403.1.A1_at--743--1631Chr07:2687974..2687998 (25 bp)
AGCGTTTTGATGACTGATTCGTTGC
LOC_Os07g05640
Os.27403.1.A1_at--765--6311Chr07:2687982..2688006 (25 bp)
GATGACTGATTCGTTGCAAATGAAC
LOC_Os07g05640
Os.27403.1.A1_at--627--5131Chr07:2687997..2688021 (25 bp)
GCAAATGAACGAAGGAGTGTGGATT
LOC_Os07g05640
Os.27403.1.A1_at--12--7951Chr07:2688017..2688041 (25 bp)
GGATTTGGTCCGATCACGCACAAAC
LOC_Os07g05640
Os.27403.1.A1_at--747--10851Chr07:2688021..2688045 (25 bp)
TTGGTCCGATCACGCACAAACATGT
LOC_Os07g05640
Os.27403.1.A1_at--154--7251Chr07:2688024..2688048 (25 bp)
GTCCGATCACGCACAAACATGTAGT
LOC_Os07g05640
Os.27403.1.A1_at--203--3672Chr07:2688088..2688112 (25 bp)
CTTTTGAAACTTTGATCACTGATTT
LOC_Os07g05640
Target Sequence 
TGTGACACGACACGAGGCCTGTTTATTTAGCGTTTTGATGACTGATTCGTTGCAAATGAACGAAGGAGTGTGGATTTGGT
CCGATCACGCACAAACATGTAGTCATAAATATTTAAGTTTATTAAGGTAAAATTTAGATAAACTTTTGAAACTTTGATCA
CTGATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27403.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis