Browse Element(s) Details


Os.54123.1.S1_at

Description gb:AK102057.1
DB_XREF= gi:32987266
TID=Os.54123.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54123 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033082D03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033082D03, full insert sequence.
FL= gb:AK102057.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0565010/11MAGE-8 antigen, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g05630OsAffx.16101.1.S1_at11/117+2676798..2677514Glutaredoxin-like family protein, expressed
LOC_Os07g05640Os.27403.1.A1_at11/117+2684737..2688160Sugar transporter family protein, expressed
LOC_Os07g05640OsAffx.16102.1.S1_x_at11/117+2684737..2688160Sugar transporter family protein, expressed
LOC_Os07g05650Os.54123.1.S1_at10/117+2688961..2691389MAGE-8 antigen, putative, expressed
LOC_Os07g05660OsAffx.5223.1.S1_at10/117+2693310..2696011hypothetical protein
LOC_Os07g05670OsAffx.28292.1.S1_at11/117+2706056..2707763hypothetical protein
LOC_Os07g05680OsAffx.16103.1.S1_at10/117+2709560..2711284hypothetical protein
LOC_Os07g05690OsAffx.16104.1.S1_at11/117+2715501..2718131expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54123.1.S1_at--1040--5351Chr07:2689946..2689968 (23 bp)
GAAGAGGATCTCTGGCATCAATTGA
LOC_Os07g05650
Os.54123.1.S1_at--633--1371Chr07:2689987..2690011 (25 bp)
AGAGCGATGAAAACCACCCTGTTCT
LOC_Os07g05650
Os.54123.1.S1_at--240--1531Chr07:2690023..2690047 (25 bp)
AGCAGGCACTTGAACTCCTTGTGCA
LOC_Os07g05650
Os.54123.1.S1_at--16--9891NONE
TACATTTCGCAGGTTGTGAGCACAA
NONE
Os.54123.1.S1_at--970--2091Chr07:2691075..2691099 (25 bp)
ACATCTGGCTGGTAGGTTTGTCTAA
LOC_Os07g05650
Os.54123.1.S1_at--918--4871Chr07:2691135..2691159 (25 bp)
GCTATATATCTTCTTGCGTGGGCAT
LOC_Os07g05650
Os.54123.1.S1_at--270--6311Chr07:2691160..2691184 (25 bp)
GATGAGACTTCTACTGACATGCAAA
LOC_Os07g05650
Os.54123.1.S1_at--808--6251Chr07:2691230..2691254 (25 bp)
GATGGTGGACCTCTGAACTAGCTAT
LOC_Os07g05650
Os.54123.1.S1_at--872--3911Chr07:2691276..2691300 (25 bp)
CTGGCGTCCTTAACTATGTATCTGC
LOC_Os07g05650
Os.54123.1.S1_at--282--2291Chr07:2691348..2691372 (25 bp)
AAATGTTGCCGTTCAGGTCTCCTGA
LOC_Os07g05650
Os.54123.1.S1_at--752--1031Chr07:2691362..2691386 (25 bp)
AGGTCTCCTGACCTGATGTGAGGAA
LOC_Os07g05650
Target Sequence 
GAAGAGGATCTCTGGCATCAATTGAGACGGCTGGGTTTAAATGAGAGCGATGAAAACCACCCTGTTCTTGGTAACAACAA
GCAGGCACTTGAACTCCTTGTGCAGCAAAGGTACCTACTGAAGGAGAAGCTTAGTGGGCCAGAAGGCCATTCTATGATGT
ATGAGCTTGCAGAGAGAGCATTGGATGAGTCCATCAGTGGGAAGCTTAAGGATTACATTTCGCAGGTTGTGAGCACAAGC
ACTGCTGCAGAAGTAGATTGAAGTGGATATGATGAGCAAGAGATACATCTGGCTGGTAGGTTTGTCTAAGTCAGTGTATT
GGCAAGACTAACCAGGCGAAAGAAGCTATATATCTTCTTGCGTGGGCATGATGAGACTTCTACTGACATGCAAAAACTAG
TAGAGGCTTATTTTGTTTAAAGGGCTGTATAGGAGAGGAGATGGTGGACCTCTGAACTAGCTATATAATTTAGGCCATAC
AAAAACTGGCGTCCTTAACTATGTATCTGCTACAAATATTCTATAACTTAAGCGTTATTATATCATCATCATGCTTGAAA
TGTTGCCGTTCAGGTCTCCTGACCTGATGTGAGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54123.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis