Browse Element(s) Details


OsAffx.16140.1.S1_at

Description tigr:9635.m00716
TID=OsAffx.16140.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0767011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g07620OsAffx.16139.1.S1_at11/117+3816400..3819018exostosin family protein, putative, expressed
LOC_Os07g07630OsAffx.28329.1.S1_at10/117+3821023..3822292hypothetical protein
LOC_Os07g07640OsAffx.28330.1.S1_at7/117+3823496..3823900hypothetical protein
LOC_Os07g07654Os.17804.1.S1_at11/117+3828629..3838567expressed protein
LOC_Os07g07654Os.17804.2.S1_at11/117+3828629..3838567expressed protein
LOC_Os07g07654Os.17804.2.S1_x_at11/117+3828629..3838567expressed protein
LOC_Os07g07670OsAffx.16140.1.S1_at11/117+3841927..3842743expressed protein
LOC_Os07g07680OsAffx.16141.1.S1_at11/117+3844671..3848712hydroxyproline-rich glycoprotein family protein, putative, expressed
LOC_Os07g07680Os.6141.1.S1_s_at11/117+3844671..3848712hydroxyproline-rich glycoprotein family protein, putative, expressed
LOC_Os07g07690Os.49102.1.S1_x_at11/117+3858055..3866591PHD-finger family protein, expressed
LOC_Os07g07690Os.18324.1.S1_at10/117+3858055..3866591PHD-finger family protein, expressed
LOC_Os07g07690OsAffx.28331.1.S1_x_at10/117+3858055..3866591PHD-finger family protein, expressed
LOC_Os07g07690Os.49102.1.S2_x_at9/117+3858055..3866591PHD-finger family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16140.1.S1_at--329--10011Chr07:3842066..3842090 (25 bp)
TAGGGTTTCGAGAGGATCCCGCTGC
LOC_Os07g07670
OsAffx.16140.1.S1_at--412--10311Chr07:3842071..3842095 (25 bp)
TTTCGAGAGGATCCCGCTGCTTGCG
LOC_Os07g07670
OsAffx.16140.1.S1_at--1158--4751Chr07:3842086..3842110 (25 bp)
GCTGCTTGCGAGTCCCGACCATGAG
LOC_Os07g07670
OsAffx.16140.1.S1_at--1161--10691Chr07:3842091..3842115 (25 bp)
TTGCGAGTCCCGACCATGAGGGTGC
LOC_Os07g07670
OsAffx.16140.1.S1_at--986--7231Chr07:3842097..3842121 (25 bp)
GTCCCGACCATGAGGGTGCACCCGG
LOC_Os07g07670
OsAffx.16140.1.S1_at--159--8191Chr07:3842128..3842152 (25 bp)
GGAAGCGCACCATCGCCGTGCAGCG
LOC_Os07g07670
OsAffx.16140.1.S1_at--914--2891Chr07:3842229..3842253 (25 bp)
AAGGTGCTCGAGCTCCCGTTCGCCG
LOC_Os07g07670
OsAffx.16140.1.S1_at--528--7071Chr07:3842370..3842394 (25 bp)
GTCACCAAGGTTGTCGTGCGGGACC
LOC_Os07g07670
OsAffx.16140.1.S1_at--804--3211Chr07:3842375..3842399 (25 bp)
CAAGGTTGTCGTGCGGGACCTCTCC
LOC_Os07g07670
OsAffx.16140.1.S1_at--1081--10771Chr07:3842380..3842404 (25 bp)
TTGTCGTGCGGGACCTCTCCGCCGG
LOC_Os07g07670
OsAffx.16140.1.S1_at--312--1591Chr07:3842434..3842458 (25 bp)
AGCTCGATCGGTGGCGGTTCCGCCT
LOC_Os07g07670
Target Sequence 
TAGGGTTTCGAGAGGATCCCGCTGCTTGCGAGTCCCGACCATGAGGGTGCACCCGGCGCCGCGGAAGCGCACCATCGCCG
TGCAGCGGCGGTGCGGGGTGGCCGCGGCGGCGGCGGGGATGGCCGGCGGGAAGAAGCTGAGGCGGCTCCCGCACATCTTC
GCCAAGGTGCTCGAGCTCCCGTTCGCCGCGGACGCCGACGTCTCCGTGGAGGAGGACGCCGCGGCGCTCCGGTTCGTGGC
CGCGGCGGACGGGTTCACCCCGTCCGGCGGCGCCAGCGCCCACGCCGTCGAGATCCACCCGGGGGTCACCAAGGTTGTCG
TGCGGGACCTCTCCGCCGGGCTCGACGGCGACGACGGCGCCGTGTTCGAGCTCGATCGGTGGCGGTTCCGCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16140.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis