Browse Element(s) Details


OsAffx.16141.1.S1_at

Description tigr:9635.m00717
TID=OsAffx.16141.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to hydroxyproline-rich glycoprotein-like protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0768011/11hydroxyproline-rich glycoprotein family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g07630OsAffx.28329.1.S1_at10/117+3821023..3822292hypothetical protein
LOC_Os07g07640OsAffx.28330.1.S1_at7/117+3823496..3823900hypothetical protein
LOC_Os07g07654Os.17804.1.S1_at11/117+3828629..3838567expressed protein
LOC_Os07g07654Os.17804.2.S1_at11/117+3828629..3838567expressed protein
LOC_Os07g07654Os.17804.2.S1_x_at11/117+3828629..3838567expressed protein
LOC_Os07g07670OsAffx.16140.1.S1_at11/117+3841927..3842743expressed protein
LOC_Os07g07680OsAffx.16141.1.S1_at11/117+3844671..3848712hydroxyproline-rich glycoprotein family protein, putative, expressed
LOC_Os07g07680Os.6141.1.S1_s_at11/117+3844671..3848712hydroxyproline-rich glycoprotein family protein, putative, expressed
LOC_Os07g07690Os.49102.1.S1_x_at11/117+3858055..3866591PHD-finger family protein, expressed
LOC_Os07g07690Os.18324.1.S1_at10/117+3858055..3866591PHD-finger family protein, expressed
LOC_Os07g07690OsAffx.28331.1.S1_x_at10/117+3858055..3866591PHD-finger family protein, expressed
LOC_Os07g07690Os.49102.1.S2_x_at9/117+3858055..3866591PHD-finger family protein, expressed
LOC_Os07g07709Os.38506.1.S1_s_at10/117+3870436..388385640S ribosomal protein S18, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16141.1.S1_at--900--4931Chr07:3845208..3845232 (25 bp)
GCTTGTGTTACTTAGCTGTAGTGCA
LOC_Os07g07680
OsAffx.16141.1.S1_at--996--6431Chr07:3845143..3845167 (25 bp)
GATCATGGTCCTCATGTTCATCCAT
LOC_Os07g07680
OsAffx.16141.1.S1_at--1122--2111Chr07:3845098..3845122 (25 bp)
ACATGGCTCGTGTCCTGAGAGGCAT
LOC_Os07g07680
OsAffx.16141.1.S1_at--59--1331Chr07:3845081..3845105 (25 bp)
AGAGGCATGTGTGCGTGTGCTCACT
LOC_Os07g07680
OsAffx.16141.1.S1_at--306--7591Chr07:3845054..3845078 (25 bp)
GGGCTTTCATTCATGCATATCTAGC
LOC_Os07g07680
OsAffx.16141.1.S1_at--551--6471Chr07:3845021..3845045 (25 bp)
GATAAATAGCTCTTGTACTTTCTTT
LOC_Os07g07680
OsAffx.16141.1.S1_at--1003--10351Chr07:3844983..3845007 (25 bp)
TTTTTGCTGGCCATGTGTTGATAAA
LOC_Os07g07680
OsAffx.16141.1.S1_at--390--10791Chr07:3844944..3844968 (25 bp)
TTGTTTTGATCACCGTTTTTGCTAG
LOC_Os07g07680
OsAffx.16141.1.S1_at--276--4871Chr07:3844924..3844948 (25 bp)
GCTAGTGATGTCTGCCTTTGTTAAC
LOC_Os07g07680
OsAffx.16141.1.S1_at--602--1491Chr07:3844887..3844911 (25 bp)
AGCACCGTCAGTCTGGCTTTATGAA
LOC_Os07g07680
OsAffx.16141.1.S1_at--1062--5191Chr07:3844737..3844761 (25 bp)
GCAATTCTTTTCCAAGTGCTTCTCT
LOC_Os07g07680
Target Sequence 
GCTTGTGTTACTTAGCTGTAGTGCAGCTGGAACTGTGTGGTTTGGTAGGGGCAAGGTTAGTGAGTGATCATGGTCCTCAT
GTTCATCCATAATGTTAGTGGGGTATGGGCACATGGCTCGTGTCCTGAGAGGCATGTGTGCGTGTGCTCACTTGGGGCTT
TCATTCATGCATATCTAGCCATGTGTTGATAAATAGCTCTTGTACTTTCTTTTTTGTTCACCTTTTTTTTGCTGGCCATG
TGTTGATAAAATAGCTACTGTACTTTGTTTTGATCACCGTTTTTGCTAGTGATGTCTGCCTTTGTTAACAGTGTGGAGTA
AAGCACCGTCAGTCTGGCTTTATGAAATTTGTACACTACAGATCTTGATGGTTTTTCAAATAGTGATTCATACAGTTTTT
GCATTGGTTTACAGTTTTTTTTGCTGTTTTTCATACATGAGTTTGTCGGACTATGTTGATGAGCATAGTAAGCAATTCTT
TTCCAAGTGCTTCTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16141.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis