Browse Element(s) Details


OsAffx.16151.1.S1_at

Description tigr:9635.m00769
TID=OsAffx.16151.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0820011/1137 kDa inner envelope membrane protein, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g08180Os.33587.1.S2_at11/117+4154503..4158091pentatricopeptide, putative, expressed
LOC_Os07g08180Os.33587.1.S1_x_at11/117+4154503..4158091pentatricopeptide, putative, expressed
LOC_Os07g08190Os.14272.1.A1_at11/117+4173780..4179946peptidyl-prolyl cis-trans isomerase, cyclophilin-type family protein, expressed
LOC_Os07g08200OsAffx.16151.1.S1_at11/117+4180344..418234837 kDa inner envelope membrane protein, chloroplast precursor, putative, expressed
LOC_Os07g08210Os.19026.1.S1_at11/117+4183505..4186325Cytidylyltransferase family protein, expressed
LOC_Os07g08220OsAffx.16152.1.S1_at11/117+4189376..4193389expressed protein
LOC_Os07g08230OsAffx.5252.1.S1_at11/117+4194715..4195365hypothetical protein
LOC_Os07g08240Os.18977.1.S1_at11/117+4197562..4199468ZmEBE-1 protein, putative, expressed
LOC_Os07g08250NANA7+4205285..4205608hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0010189biological_processvitamin E biosynthesis
GO:0010236biological_processplastoquinone biosynthesis
GO:0009507cellular_componentchloroplast
GO:0009706cellular_componentchloroplast inner membrane
GO:0008168molecular_functionmethyltransferase activity
GO:0008757molecular_functionS-adenosylmethionine-dependent methyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16151.1.S1_at--251--9931Chr07:4181174..4181198 (25 bp)
TACTGGCTCTTATGATTGTTTTGAC
LOC_Os07g08200
OsAffx.16151.1.S1_at--702--9591Chr07:4180970..4180993 (24 bp)
TCATTGAGTACTGGCCTGATCCACA
LOC_Os07g08200
OsAffx.16151.1.S1_at--1055--5411Chr07:4180932..4180956 (25 bp)
GAAGCCTACAGGGTCCTGAAGCTAG
LOC_Os07g08200
OsAffx.16151.1.S1_at--130--8551Chr07:4180906..4180930 (25 bp)
TGGAGTTGCCTGTTTGATTGGCCCG
LOC_Os07g08200
OsAffx.16151.1.S1_at--397--7891Chr07:4180882..4180906 (25 bp)
GGTTCACCCAACCTTTTGGCTGTCA
LOC_Os07g08200
OsAffx.16151.1.S1_at--652--3411Chr07:4180797..4180821 (25 bp)
CAGAAGGCAGGGTTCCAGGATGTCA
LOC_Os07g08200
OsAffx.16151.1.S1_at--380--11Chr07:4180761..4180785 (25 bp)
ATTGGGCCCAAATGGTACCGCGGTG
LOC_Os07g08200
OsAffx.16151.1.S1_at--315--7351Chr07:4180695..4180719 (25 bp)
GTGAAGCGATCGTCTGGCGATTCCC
LOC_Os07g08200
OsAffx.16151.1.S1_at--343--2371Chr07:4180448..4180472 (25 bp)
AAACCAGTGAATCCTTTCACCTTCA
LOC_Os07g08200
OsAffx.16151.1.S1_at--648--8111Chr07:4180405..4180429 (25 bp)
GGACGATTTGCGCTTCTTATTATGT
LOC_Os07g08200
OsAffx.16151.1.S1_at--799--10211Chr07:4180388..4180412 (25 bp)
TATTATGTGCTGGTACCTATCTACA
LOC_Os07g08200
Target Sequence 
TACTGGCTCTTATGATTGTTTTGACTTATATTGTCCATGTGAAGATCATTGAGTACTGGCCTGATCCACAACGAGGAATC
AGGGAAGCCTACAGGGTCCTGAAGCTAGGTGGAGTTGCCTGTTTGATTGGCCCGGTTCACCCAACCTTTTGGCTGTCACG
CTTCTTCGCCGACATGTGGATGCTCTTCCCCAAGGAAGAAGAGTACATAGAATGGTTCCAGAAGGCAGGGTTCCAGGATG
TCAAGATCAAGAGAATTGGGCCCAAATGGTACCGCGGTGTTCGACGCCATGGCCTGATCATGGGGTGCTCTGTGACAGGC
GTGAAGCGATCGTCTGGCGATTCCCCTTTGCAGCTTGGTCCAAAGGCTGAAGATGTTGAGAAACCAGTGAATCCTTTCAC
CTTCATCTTCCGCTTCGTCATGGGGACGATTTGCGCTTCTTATTATGTGCTGGTACCTATCTACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16151.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis