Browse Element(s) Details


OsAffx.16256.1.S1_at

Description tigr:9635.m01399
TID=OsAffx.16256.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1413011/11pectinesterase inhibitor domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g14090Os.21241.1.S1_at11/117+8035809..8041065MAP kinase-activating protein C22orf5 homolog, putative, expressed
LOC_Os07g14100Os.6180.1.S1_at10/117+8041797..8043495pentatricopeptide, putative, expressed
LOC_Os07g14110OsAffx.28408.2.S1_at11/117+8052066..8053836Myb-like DNA-binding domain containing protein
LOC_Os07g14120OsAffx.16255.1.S1_at11/117+8057234..8058666agmatine coumaroyltransferase, putative
LOC_Os07g14120OsAffx.16255.1.S1_x_at11/117+8057234..8058666agmatine coumaroyltransferase, putative
LOC_Os07g14120OsAffx.31441.1.S1_x_at3/117+8057234..8058666agmatine coumaroyltransferase, putative
LOC_Os07g14130OsAffx.16256.1.S1_at11/117+8062127..8062717pectinesterase inhibitor domain containing protein
LOC_Os07g14140OsAffx.5327.1.S1_at11/117+8063511..8064524hypothetical protein
LOC_Os07g14150Os.23405.1.S1_at11/117+8073942..8076504Guanine deaminase, putative, expressed
LOC_Os07g14160Os.38192.1.S1_at10/117+8077213..8081104Polygalacturonase family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16256.1.S1_at--371--9271Chr07:8062211..8062235 (25 bp)
TCCTCCACGCTGCTGCAGGACAAGT
LOC_Os07g14130
OsAffx.16256.1.S1_at--647--3831Chr07:8062220..8062244 (25 bp)
CTGCTGCAGGACAAGTGCGAGCTCT
LOC_Os07g14130
OsAffx.16256.1.S1_at--782--951Chr07:8062227..8062251 (25 bp)
AGGACAAGTGCGAGCTCTACGCCGC
LOC_Os07g14130
OsAffx.16256.1.S1_at--393--8411Chr07:8062260..8062284 (25 bp)
GGCCCAGCTACGACTACTGCATCAG
LOC_Os07g14130
OsAffx.16256.1.S1_at--193--5711Chr07:8062271..8062295 (25 bp)
GACTACTGCATCAGGACGCTGCGGG
LOC_Os07g14130
OsAffx.16256.1.S1_at--190--1091Chr07:8062301..8062325 (25 bp)
AGGGCGAGCGCCACCGATGACGAGC
LOC_Os07g14130
OsAffx.16256.1.S1_at--889--2791Chr07:8062385..8062409 (25 bp)
AAGATCGCCAGGCTGCAGCGCGGCG
LOC_Os07g14130
OsAffx.16256.1.S1_at--186--7511Chr07:8062481..8062505 (25 bp)
GGGCGCGCCGCGAGGGACGTCGTGT
LOC_Os07g14130
OsAffx.16256.1.S1_at--543--8091Chr07:8062582..8062606 (25 bp)
GGAGCGCTGCGACGTCGCGTTCGAG
LOC_Os07g14130
OsAffx.16256.1.S1_at--693--4491Chr07:8062637..8062661 (25 bp)
GCCGTGGACCGAGATCGAGCTCGAC
LOC_Os07g14130
OsAffx.16256.1.S1_at--276--9432Chr09:14882078..14882098 (21 bp)
TCGTGGTCGGGTTGGCCTCCGACAT
NONE
Target Sequence 
TCCTCCACGCTGCTGCAGGACAAGTGCGAGCTCTACGCCGCCGGCGACCGGCCCAGCTACGACTACTGCATCAGGACGCT
GCGGGCGGACAGGGCGAGCGCCACCGATGACGAGCGCGGGCTCGCCGCCATCGCGGCCAGGATCGCCCGCGCGACCGCCG
TGGCCACGGGCGCCAAGATCGCCAGGCTGCAGCGCGGCGAGACGGCGCCCGCGCGGCGGGACGGCCTGGCCGCCTGCGCC
GCGGAGTACGCCGCCGCCGTGCGCCGGCTCGGGCGCGCCGCGAGGGACGTCGTGTCGCGCTCGCGCGGCGGGGCCGGGGC
GAGGGAGATGCGCGAGGCGCAGACGCTGCTGGCGGAGGTGACTGGCGCGCCGGAGCGCTGCGACGTCGCGTTCGAGGCCG
CCGGCGGACAGGGGTCGCCGCTGGACGCCGTGGACCGAGATCGAGCTCGACGTCGTGGTCGGGTTGGCCTCCGACAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16256.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis