Browse Element(s) Details


OsAffx.16310.1.S1_at

Description tigr:9635.m01752
TID=OsAffx.16310.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=NB-ARC domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1742011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g17380OsAffx.24740.3.A1_at11/117+10258929..10259447hypothetical protein
LOC_Os07g17390Os.52297.1.S1_at2/117+10260419..10264183Thylakoid lumenal 21.5 kDa protein, chloroplast precursor, putative, expressed
LOC_Os07g17400Os.16548.1.S1_at11/117+10272534..10276201RNA-binding protein, putative, expressed
LOC_Os07g17410OsAffx.28491.1.S1_at11/117+10281144..10281506hypothetical protein
LOC_Os07g17420OsAffx.16310.1.S1_at11/117+10282446..10285193hypothetical protein
LOC_Os07g17430OsAffx.28492.1.S1_at10/117+10288573..10289455hypothetical protein
LOC_Os07g17440NANA7+10291762..10295460retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g17450OsAffx.5352.1.S1_at9/117+10297275..10298312hypothetical protein
LOC_Os07g17460Os.52900.1.S1_at10/117+10304067..10306677F-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009613biological_processresponse to pest, pathogen or parasite
GO:0009626biological_processhypersensitive response
GO:0000166molecular_functionnucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16310.1.S1_at--560--3571Chr07:10283086..10283110 (25 bp)
CATATGGCAGTGTTCGTCGTTTGTC
LOC_Os07g17420
OsAffx.16310.1.S1_at--584--7211Chr07:10283071..10283095 (25 bp)
GTCGTTTGTCCATCCACAGTGATGA
LOC_Os07g17420
OsAffx.16310.1.S1_at--1047--2231Chr07:10283021..10283045 (25 bp)
AAATTGAGTCACATCCGGTCATTGA
LOC_Os07g17420
OsAffx.16310.1.S1_at--485--4211Chr07:10282986..10283010 (25 bp)
CCCCAGTGGTCATCGAAGGCTATTG
LOC_Os07g17420
OsAffx.16310.1.S1_at--308--6471Chr07:10282961..10282985 (25 bp)
GATAAACTATCCGAGTTCACCCTAC
LOC_Os07g17420
OsAffx.16310.1.S1_at--1065--7771Chr07:10282937..10282956 (20 bp)
GGTGCTCGACCTACAAGATTATATA
LOC_Os07g17420
OsAffx.16310.1.S1_at--507--2511Chr07:10282726..10282750 (25 bp)
AACTTGAGCGCGTAGGTTTCACAAA
LOC_Os07g17420
OsAffx.16310.1.S1_at--524--1271Chr07:10282588..10282612 (25 bp)
AGATCGGTGACCTTGTACAGTTGCA
LOC_Os07g17420
OsAffx.16310.1.S1_at--1003--1231Chr07:10282570..10282594 (25 bp)
AGTTGCAAGTTCTCGGTGTCATCCT
LOC_Os07g17420
OsAffx.16310.1.S1_at--155--7451Chr07:10282555..10282579 (25 bp)
GTGTCATCCTCAGTTGCTCCAATTG
LOC_Os07g17420
OsAffx.16310.1.S1_at--187--931Chr07:10282491..10282515 (25 bp)
AGGAAGGTCTCCACGAGTTGTTTAT
LOC_Os07g17420
Target Sequence 
CATATGGCAGTGTTCGTCGTTTGTCCATCCACAGTGATGACCAAGGGTATGGCATCGACAATACAAAATTGAGTCACATC
CGGTCATTGACCACTTTTCGCCCCAGTGGTCATCGAAGGCTATTGGATAAACTATCCGAGTTCACCCTACTGAGGGTGCT
CGACCTACAAGATTATATAACAGAATTGCCTAGCCAGATAAACAAGCTACATCATTTGTACACTCTATGGTTATATGAAA
CATTGCTTAACAAGGTCCCGGAATCCTTGGTCGATCTAGAGAAACTTGAGCGCGTAGGTTTCACAAATAGACATGACCCA
ACAATACTTCTGAGGCTACCCCGTCACATTAGGAAAATGAAGGTCTTACAACAGATATATAGTTTCGAACTCCGTAAGGA
TGACGTTCAACTTGCTAGAGAGATCGGTGACCTTGTACAGTTGCAAGTTCTCGGTGTCATCCTCAGTTGCTCCAATTGCT
CCAATGAGCAGGTTCTCATCGAGCTCGCCAAATCCATAGGAAGGTCTCCACGAGTTGTTTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16310.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis