Browse Element(s) Details


OsAffx.16324.1.S1_at

Description gb:NM_185291.1
DB_XREF= gi:34897667
GEN=OSJNBb0091I19.28
TID=OsAffx.16324.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OSJNBb0091I19.28 (OSJNBb0091I19.28), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1848011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g18450OsAffx.22759.1.S1_at1/117+10910940..10914497retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g18450OsAffx.26987.1.S1_at1/117+10910940..10914497retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g18460OsAffx.28509.1.S1_at11/117+10920767..10923262hypothetical protein
LOC_Os07g18469NANA7+10924400..10924793NA
LOC_Os07g18480OsAffx.16324.2.S1_s_at11/117+10932723..10933068hypothetical protein
LOC_Os07g18480OsAffx.16324.1.S1_x_at11/117+10932723..10933068hypothetical protein
LOC_Os07g18480OsAffx.16324.1.S1_at11/117+10932723..10933068hypothetical protein
LOC_Os07g18489OsAffx.22832.2.S1_at1/117+10939766..10941659NA
LOC_Os07g18489OsAffx.22832.2.S1_x_at1/117+10939766..10941659NA
LOC_Os07g18500Os.46012.2.S1_x_at10/117+10943695..10948410retrotransposon protein, putative, unclassified
LOC_Os07g18500Os.46012.3.S1_x_at6/117+10943695..10948410retrotransposon protein, putative, unclassified
LOC_Os07g18500Os.27088.1.A1_x_at5/117+10943695..10948410retrotransposon protein, putative, unclassified
LOC_Os07g18510Os.34012.1.S1_at11/117+10952398..10954190F-box domain containing protein, expressed
LOC_Os07g18520Os.26886.2.S1_s_at10/117+10957393..10960487transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g18520Os.26886.6.S1_s_at10/117+10957393..10960487transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g18520OsAffx.16467.1.S1_at3/117+10957393..10960487transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16324.1.S1_at--852--7491Chr07:10932805..10932965 (25 bp)
GTGGTAGAAGACTCGCTGTGGTTAT
LOC_Os07g18480
OsAffx.16324.1.S1_at--404--10031Chr07:10932949..10932969 (21 bp)
TAGAAGACTCGCTGTGGTTATTATC
LOC_Os07g18480
OsAffx.16324.1.S1_at--36--2771Chr07:10932949..10932972 (24 bp)
AAGACTCGCTGTGGTTATTATCGAT
LOC_Os07g18480
OsAffx.16324.1.S1_at--1085--5711Chr07:10932950..10932974 (25 bp)
GACTCGCTGTGGTTATTATCGATGG
LOC_Os07g18480
OsAffx.16324.1.S1_at--1141--4131Chr07:10932954..10932978 (25 bp)
CGCTGTGGTTATTATCGATGGGAAC
LOC_Os07g18480
OsAffx.16324.1.S1_at--567--10411Chr07:10932965..10932989 (25 bp)
TTATCGATGGGAACTTTGATGCTGA
LOC_Os07g18480
OsAffx.16324.1.S1_at--898--791Chr07:10932971..10932995 (25 bp)
ATGGGAACTTTGATGCTGATAGCTC
LOC_Os07g18480
OsAffx.16324.1.S1_at--621--8171Chr07:10932974..10932998 (25 bp)
GGAACTTTGATGCTGATAGCTCCAT
LOC_Os07g18480
OsAffx.16324.1.S1_at--1092--2031Chr07:10932977..10933001 (25 bp)
ACTTTGATGCTGATAGCTCCATTGA
LOC_Os07g18480
OsAffx.16324.1.S1_at--776--10771Chr07:10932980..10933004 (25 bp)
TTGATGCTGATAGCTCCATTGAGCC
LOC_Os07g18480
OsAffx.16324.1.S1_at--854--8851Chr07:10932981..10933005 (25 bp)
TGATGCTGATAGCTCCATTGAGCCC
LOC_Os07g18480
Target Sequence 
GTGGTAGAAGACTCGCTGTGGTTATTATCGATGGGAACTTTGATGCTGATAGCTCCATTGAGCCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16324.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis