Browse Element(s) Details


OsAffx.16324.1.S1_x_at

Description gb:NM_185291.1
DB_XREF= gi:34897667
GEN=OSJNBb0091I19.28
TID=OsAffx.16324.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OSJNBb0091I19.28 (OSJNBb0091I19.28), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1848011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g18450OsAffx.22759.1.S1_at1/117+10910940..10914497retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g18450OsAffx.26987.1.S1_at1/117+10910940..10914497retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g18460OsAffx.28509.1.S1_at11/117+10920767..10923262hypothetical protein
LOC_Os07g18469NANA7+10924400..10924793NA
LOC_Os07g18480OsAffx.16324.2.S1_s_at11/117+10932723..10933068hypothetical protein
LOC_Os07g18480OsAffx.16324.1.S1_x_at11/117+10932723..10933068hypothetical protein
LOC_Os07g18480OsAffx.16324.1.S1_at11/117+10932723..10933068hypothetical protein
LOC_Os07g18489OsAffx.22832.2.S1_at1/117+10939766..10941659NA
LOC_Os07g18489OsAffx.22832.2.S1_x_at1/117+10939766..10941659NA
LOC_Os07g18500Os.46012.2.S1_x_at10/117+10943695..10948410retrotransposon protein, putative, unclassified
LOC_Os07g18500Os.46012.3.S1_x_at6/117+10943695..10948410retrotransposon protein, putative, unclassified
LOC_Os07g18500Os.27088.1.A1_x_at5/117+10943695..10948410retrotransposon protein, putative, unclassified
LOC_Os07g18510Os.34012.1.S1_at11/117+10952398..10954190F-box domain containing protein, expressed
LOC_Os07g18520Os.26886.2.S1_s_at10/117+10957393..10960487transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g18520Os.26886.6.S1_s_at10/117+10957393..10960487transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g18520OsAffx.16467.1.S1_at3/117+10957393..10960487transposon protein, putative, CACTA, En/Spm sub-class

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16324.1.S1_x_at--369--1791Chr07:10932753..10932777 (25 bp)
ACCGTTCACAAGTATGATGACGCAC
LOC_Os07g18480
OsAffx.16324.1.S1_x_at--825--6291Chr07:10932768..10932792 (25 bp)
GATGACGCACGTAGCAATGGCAATG
LOC_Os07g18480
OsAffx.16324.1.S1_x_at--287--3211Chr07:10932782..10932806 (25 bp)
CAATGGCAATGGGTTGCAGCAGCGT
LOC_Os07g18480
OsAffx.16324.1.S1_x_at--65--6671Chr07:10932794..10932814 (21 bp)
GTTGCAGCAGCGTGGTAGAAGACTC
LOC_Os07g18480
OsAffx.16324.1.S1_x_at--851--7491Chr07:10932805..10932965 (25 bp)
GTGGTAGAAGACTCGCTGTGGTTAT
LOC_Os07g18480
OsAffx.16324.1.S1_x_at--37--2771Chr07:10932949..10932972 (24 bp)
AAGACTCGCTGTGGTTATTATCGAT
LOC_Os07g18480
OsAffx.16324.1.S1_x_at--510--3871Chr07:10932956..10932980 (25 bp)
CTGTGGTTATTATCGATGGGAACTT
LOC_Os07g18480
OsAffx.16324.1.S1_x_at--899--791Chr07:10932971..10932995 (25 bp)
ATGGGAACTTTGATGCTGATAGCTC
LOC_Os07g18480
OsAffx.16324.1.S1_x_at--777--10771Chr07:10932980..10933004 (25 bp)
TTGATGCTGATAGCTCCATTGAGCC
LOC_Os07g18480
OsAffx.16324.1.S1_x_at--699--10751Chr07:10932998..10933022 (25 bp)
TTGAGCCCCTCATCGGCAACGAGGA
LOC_Os07g18480
OsAffx.16324.1.S1_x_at--574--5151Chr07:10933013..10933037 (25 bp)
GCAACGAGGAGGTCGACCCCAACAA
LOC_Os07g18480
Target Sequence 
ACCGTTCACAAGTATGATGACGCACGTAGCAATGGCAATGGGTTGCAGCAGCGTGGTAGAAGACTCGCTGTGGTTATTAT
CGATGGGAACTTTGATGCTGATAGCTCCATTGAGCCCCTCATCGGCAACGAGGAGGTCGACCCCAACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16324.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis