Browse Element(s) Details


OsAffx.16342.1.S1_at

Description tigr:9635.m01985
TID=OsAffx.16342.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to At1g64600
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2015011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g19594OsAffx.20689.1.A1_x_at1/117+11603236..11610359retrotransposon protein, putative, unclassified
LOC_Os07g20100OsAffx.5382.1.S1_at11/117+11613954..11614678expressed protein
LOC_Os07g20110OsAffx.16339.1.S1_s_at11/117+11617440..11619279expressed protein
LOC_Os07g20120OsAffx.16340.1.S1_at11/117+11621339..11621578hypothetical protein
LOC_Os07g20130Os.53221.1.S1_at11/117+11625713..11626690MATH domain containing protein, expressed
LOC_Os07g20140OsAffx.16341.1.S1_at11/117+11628487..11628714hypothetical protein
LOC_Os07g20140OsAffx.16341.1.S1_x_at11/117+11628487..11628714hypothetical protein
LOC_Os07g20150OsAffx.16342.1.S1_at11/117+11630345..11634963expressed protein
LOC_Os07g20150Os.6134.1.S1_at7/117+11630345..11634963expressed protein
LOC_Os07g20160NANA7+11635585..11636241hypothetical protein
LOC_Os07g20170Os.46559.1.S1_at2/117+11641581..11644132Cofilin/tropomyosin-type actin-binding protein, expressed
LOC_Os07g20180OsAffx.28523.1.S1_at11/117+11645726..11646654hypothetical protein
LOC_Os07g20190NANA7+11652071..11653820retrotransposon, putative, centromere-specific
LOC_Os07g20200Os.31312.5.S1_x_at1/117+11655678..11658978retrotransposon protein, putative, unclassified
LOC_Os07g20210NANA7+11659606..11663784retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16342.1.S1_at--160--5071Chr07:11632189..11632213 (25 bp)
GCAGCTCTGGGACCTAACAGGAGAT
LOC_Os07g20150
OsAffx.16342.1.S1_at--984--6771Chr07:11632050..11632074 (25 bp)
GTTAGAGCCTGGAACTCCTCAAGGA
LOC_Os07g20150
OsAffx.16342.1.S1_at--989--2271Chr07:11632009..11632033 (25 bp)
AAATGCGCTCGTATATCCTTTGGAT
LOC_Os07g20150
OsAffx.16342.1.S1_at--537--6131Chr07:11631191..11631215 (25 bp)
GAGGTCCAATGGTGTGCCTTTGCGT
LOC_Os07g20150
OsAffx.16342.1.S1_at--631--5391Chr07:11630971..11630995 (25 bp)
GAAGCTTGGCCACTCGATGGTATGA
LOC_Os07g20150
OsAffx.16342.1.S1_at--73--1371Chr07:11630940..11630964 (25 bp)
AGACTCTTAAAGAACGCCACGCCAA
LOC_Os07g20150
OsAffx.16342.1.S1_at--642--5551Chr07:11630913..11630937 (25 bp)
GAAACCCAGAAGATCTCATCATTGA
LOC_Os07g20150
OsAffx.16342.1.S1_at--395--5351Chr07:11630781..11630805 (25 bp)
GAAGAGGCTCCTGTTAACGCTGAGG
LOC_Os07g20150
OsAffx.16342.1.S1_at--196--2611Chr07:11630766..11630790 (25 bp)
AACGCTGAGGATTGTTTGGTCCCAT
LOC_Os07g20150
OsAffx.16342.1.S1_at--29--7251Chr07:11630748..11630772 (25 bp)
GTCCCATACGACTCTGATGCACAAG
LOC_Os07g20150
OsAffx.16342.1.S1_at--1010--1351Chr07:11630686..11630710 (25 bp)
AGAGCAATCTGTCCGTGCTGATCTA
LOC_Os07g20150
Target Sequence 
GCAGCTCTGGGACCTAACAGGAGATGTTTTGGTTTTGTTAGAGCCTGGAACTCCTCAAGGAGCAAAGATTATAAGCCAAA
TGCGCTCGTATATCCTTTGGATGGAAAAGAGAAAGTGCCGCAAAATTGAAAAATCCACACGTGCTGCTCCAAGTGAAATG
AAGAGCATTGTATGTCAAGAAGCCTCATTGAAAAATGGTGCTTTTGTGGTTGCCCCGAGGTCCAATGGTGTGCCTTTGCG
TGGTTTTGAGGATGAGAAATTTTGCTACGTTGCTTTAAGAAGGGGCAAGCGGCCAGAGGAAGCTTGGCCACTCGATGGTA
TGAAATTTGAGACTCTTAAAGAACGCCACGCCAAGAGAAACCCAGAAGATCTCATCATTGACTATGACGAACAATTTCCA
AGCGAGGAAGATGAAGAGGCTCCTGTTAACGCTGAGGATTGTTTGGTCCCATACGACTCTGATGCACAAGAACTAGGTTT
ATTCCATGAGACCGAAGAGGAGTTCGAAGAGCAATCTGTCCGTGCTGATCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16342.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis