Browse Element(s) Details


OsAffx.16365.1.S1_at

Description tigr:9635.m02164
TID=OsAffx.16365.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2284011/11Anaphase promoting complex subunit 11, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g22784NANA7+12859119..12859264NA
LOC_Os07g22800NANA7+12862728..12864535retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g22810OsAffx.19542.3.S1_x_at2/117+12865619..12866554retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g22820OsAffx.14826.2.S1_at1/117+12869844..12872325Transposable element protein, putative, Retrotrans_gag
LOC_Os07g22830NANA7+12875247..12875930retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g22840OsAffx.16365.1.S1_at11/117+12879998..12881739Anaphase promoting complex subunit 11, putative
LOC_Os07g22840OsAffx.16365.1.S1_x_at11/117+12879998..12881739Anaphase promoting complex subunit 11, putative
LOC_Os07g22840OsAffx.23616.1.S1_at1/117+12879998..12881739Anaphase promoting complex subunit 11, putative
LOC_Os07g22850OsAffx.28544.2.S1_x_at11/117+12883052..12884397Chalcone and stilbene synthases, N-terminal domain containing protein, expressed
LOC_Os07g22860OsAffx.25936.1.S1_s_at11/117+12885511..12889274transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g22860OsAffx.25936.7.S1_s_at9/117+12885511..12889274transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g22860OsAffx.25936.1.S1_at9/117+12885511..12889274transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g22860OsAffx.25936.2.S1_x_at4/117+12885511..12889274transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g22860OsAffx.25936.5.S1_x_at3/117+12885511..12889274transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g22870NANA7+12893981..12894424hypothetical protein
LOC_Os07g22880Os.10827.1.S1_x_at7/117+12894838..12898385transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g22880Os.46055.2.S1_x_at6/117+12894838..12898385transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g22890OsAffx.16366.1.S1_at11/117+12900310..12902163hypothetical protein
LOC_Os07g22890OsAffx.16366.2.S1_s_at11/117+12900310..12902163hypothetical protein
LOC_Os07g22900NANA7+12903581..12904048hypothetical protein
LOC_Os07g22910Os.27775.1.A1_at3/117+12904553..12906955hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0007346biological_processregulation of progression through mitotic cell cycle
GO:0009733biological_processresponse to auxin stimulus
GO:0016567biological_processprotein ubiquitination
GO:0000151cellular_componentubiquitin ligase complex
GO:0019005cellular_componentSCF ubiquitin ligase complex
GO:0031463cellular_componentCul3-RING ubiquitin ligase complex
GO:0004842molecular_functionubiquitin-protein ligase activity
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16365.1.S1_at--838--4151Chr07:12881535..12881559 (25 bp)
CGCCCAGGATGAAACATGCGGCATA
LOC_Os07g22840
OsAffx.16365.1.S1_at--333--4351Chr07:12881538..12881562 (25 bp)
CCAGGATGAAACATGCGGCATATGC
LOC_Os07g22840
OsAffx.16365.1.S1_at--1016--2491Chr07:12881547..12881571 (25 bp)
AACATGCGGCATATGCAGGATGGCA
LOC_Os07g22840
OsAffx.16365.1.S1_at--415--7491Chr07:12881670..12881694 (25 bp)
GTGGGTCAATTCTCAGACATCTACG
LOC_Os07g22840
OsAffx.16365.1.S1_at--102--7831Chr07:12881673..12881697 (25 bp)
GGTCAATTCTCAGACATCTACGCCA
LOC_Os07g22840
OsAffx.16365.1.S1_at--135--9751Chr07:12881675..12881699 (25 bp)
TCAATTCTCAGACATCTACGCCACT
LOC_Os07g22840
OsAffx.16365.1.S1_at--275--3151Chr07:12881677..12881701 (25 bp)
AATTCTCAGACATCTACGCCACTTT
LOC_Os07g22840
OsAffx.16365.1.S1_at--374--111Chr07:12881678..12881702 (25 bp)
ATTCTCAGACATCTACGCCACTTTG
LOC_Os07g22840
OsAffx.16365.1.S1_at--115--10591Chr07:12881679..12881703 (25 bp)
TTCTCAGACATCTACGCCACTTTGC
LOC_Os07g22840
OsAffx.16365.1.S1_at--675--1411Chr07:12881684..12881708 (25 bp)
AGACATCTACGCCACTTTGCCCAAT
LOC_Os07g22840
OsAffx.16365.1.S1_at--772--5671Chr07:12881685..12881709 (25 bp)
GACATCTACGCCACTTTGCCCAATG
LOC_Os07g22840
Target Sequence 
CGCCCAGGATGAAACATGCGGCATATGCAGGATGGCATTTGACGGCTGCTGCCCTGATTGTAAGTTCCCTGGCGACGATT
GTCCGCTCATCTGGGGTTCCTGCAACCACGCCTTCCATCTTCACTGCATACTCAAGTGGGTCAATTCTCAGACATCTACG
CCACTTTGCCCAATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16365.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis