Browse Element(s) Details


OsAffx.16393.1.S1_at

Description tigr:9635.m02312
TID=OsAffx.16393.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2420011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g24190Os.10178.1.S1_a_at11/117+13739849..13745511cellulose synthase A catalytic subunit 10, putative, expressed
LOC_Os07g24190Os.10178.2.S1_a_at11/117+13739849..13745511cellulose synthase A catalytic subunit 10, putative, expressed
LOC_Os07g24200OsAffx.16393.1.S1_at11/117+13766562..13767023hypothetical protein
LOC_Os07g24210OsAffx.5428.1.S1_x_at11/117+13768306..13768908hypothetical protein
LOC_Os07g24220OsAffx.28565.1.S1_at11/117+13769736..13770131hypothetical protein
LOC_Os07g24230Os.25449.1.S1_at11/117+13775173..13778645folate/biopterin transporter family protein, expressed
LOC_Os07g24240NANA7+13782661..13784301retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g24250NANA7+13789202..13790955retrotransposon protein, putative, unclassified
LOC_Os07g24260Os.23706.1.A1_x_at1/117+13791292..13793257retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info

Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16393.1.S1_at--19--7551Chr07:13766946..13766970 (25 bp)
GGTGCTGGCGGACACGGTAGGGCCA
LOC_Os07g24200
OsAffx.16393.1.S1_at--636--1631Chr07:13766922..13766946 (25 bp)
AGCGGGAGGCACACCAATGTTGATG
LOC_Os07g24200
OsAffx.16393.1.S1_at--101--1711Chr07:13766910..13766934 (25 bp)
ACCAATGTTGATGGCGTCGGAGTTG
LOC_Os07g24200
OsAffx.16393.1.S1_at--618--6951Chr07:13766839..13766863 (25 bp)
GTAGAGGTGGGTCGCCGGTGATGCA
LOC_Os07g24200
OsAffx.16393.1.S1_at--1095--4191Chr07:13766810..13766834 (25 bp)
CCCGGGCCGGCGAAATTGCAGGCAA
LOC_Os07g24200
OsAffx.16393.1.S1_at--571--2691Chr07:13766769..13766793 (25 bp)
AAGCTCCGGCGGAGTGATCGATGTC
LOC_Os07g24200
OsAffx.16393.1.S1_at--342--6111Chr07:13766758..13766782 (25 bp)
GAGTGATCGATGTCGGTCGCGGGAA
LOC_Os07g24200
OsAffx.16393.1.S1_at--550--6171Chr07:13766716..13766740 (25 bp)
GAGGACACGTCGACCGTGACAAGCT
LOC_Os07g24200
OsAffx.16393.1.S1_at--279--3351Chr07:13766711..13766735 (25 bp)
CACGTCGACCGTGACAAGCTTGGCA
LOC_Os07g24200
OsAffx.16393.1.S1_at--777--5291Chr07:13766675..13766699 (25 bp)
GAAGGCCTTGCGAGCGGCGGTAGAC
LOC_Os07g24200
OsAffx.16393.1.S1_at--149--4611Chr07:13766666..13766690 (25 bp)
GCGAGCGGCGGTAGACGTGGTCATC
LOC_Os07g24200
Target Sequence
GGTGCTGGCGGACACGGTAGGGCCAGCGGGAGGCACACCAATGTTGATGGCGTCGGAGTTGGTGCCTGGGGCGTTGAACG
CACCATGTGAGACGTCGATGCCGGGAGGTAGAGGTGGGTCGCCGGTGATGCACGTGCCCGGGCCGGCGAAATTGCAGGCA
ATGGCGAAGAGGGTGGCAAGCTCCGGCGGAGTGATCGATGTCGGTCGCGGGAAGCGGCGGCTTGGAGGAGGAGGACACGT
CGACCGTGACAAGCTTGGCAAGGAGGTCAGCGAAGGCCTTGCGAGCGGCGGTAGACGTGGTCATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16393.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis