Browse Element(s) Details


OsAffx.16451.1.A1_at

Description gb:NM_187239.1
DB_XREF= gi:34901563
TID=OsAffx.16451.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0404G11.29 (P0404G11.29), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g061102/11retrotransposon protein, putative, unclassified
LOC_Os07g129801/11retrotransposon protein, putative, unclassified
LOC_Os01g640801/11retrotransposon protein, putative, unclassified
LOC_Os01g518201/11retrotransposon protein, putative, unclassified
LOC_Os06g153101/11retrotransposon protein, putative, unclassified
LOC_Os07g256301/11retrotransposon protein, putative, unclassified
LOC_Os04g226901/11retrotransposon protein, putative, unclassified
LOC_Os02g477301/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g06050OsAffx.16112.1.S1_at10/117+2933971..2935109hypothetical protein
LOC_Os07g06060Os.47878.1.S1_at10/117+2938593..2941125expressed protein
LOC_Os07g06060OsAffx.28297.1.S1_at9/117+2938593..2941125expressed protein
LOC_Os07g06070Os.36178.2.S1_at11/117+2941639..2942167expressed protein
LOC_Os07g06080Os.5026.1.S1_at11/117+2943527..2945080FAD dependent oxidoreductase family protein, expressed
LOC_Os07g06090Os.14155.1.S1_at9/117+2945077..2947478expressed protein
LOC_Os07g06100OsAffx.28298.1.S1_at11/117+2951661..2952669hypothetical protein
LOC_Os07g06110OsAffx.16451.1.A1_x_at5/117+2958537..2965499retrotransposon protein, putative, unclassified
LOC_Os07g06110OsAffx.16451.1.A1_at2/117+2958537..2965499retrotransposon protein, putative, unclassified
LOC_Os07g06110Os.45161.1.A1_x_at2/117+2958537..2965499retrotransposon protein, putative, unclassified
LOC_Os07g06110OsAffx.8279.1.S1_at1/117+2958537..2965499retrotransposon protein, putative, unclassified
LOC_Os07g06110OsAffx.8201.1.S1_x_at1/117+2958537..2965499retrotransposon protein, putative, unclassified
LOC_Os07g06110OsAffx.22699.1.S1_x_at1/117+2958537..2965499retrotransposon protein, putative, unclassified
LOC_Os07g06120NANA7+2966018..2969022hypothetical protein
LOC_Os07g06130Os.27778.1.S1_a_at11/117+2982728..2989439Natural resistance-associated macrophage protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16451.1.A1_at--717--10854Chr07:2959298..2959322 (25 bp)
TTGGCACTAGGCCAGCTGGTGAACC
LOC_Os07g06110
OsAffx.16451.1.A1_at--387--8253Chr07:2959300..2959324 (25 bp)
GGCACTAGGCCAGCTGGTGAACCCT
LOC_Os07g06110
OsAffx.16451.1.A1_at--68--8699Chr07:14690575..14690598 (24 bp)
TGTGAATCGGCCGACGCAAGATCAA
LOC_Os07g25630
OsAffx.16451.1.A1_at--232--9011Chr07:16533485..16533509 (25 bp)
TGAATCGGCCGACGCAAGATCAAGT
NONE
OsAffx.16451.1.A1_at--433--7871Chr07:16533406..16533430 (25 bp)
GGTTCAACAGACACTTCCGATTTAG
NONE
OsAffx.16451.1.A1_at--639--2131Chr07:16533400..16533424 (25 bp)
ACAGACACTTCCGATTTAGCAGGTT
NONE
OsAffx.16451.1.A1_at--50--5631Chr07:16533397..16533421 (25 bp)
GACACTTCCGATTTAGCAGGTTGTA
NONE
OsAffx.16451.1.A1_at--631--3631Chr07:16533393..16533417 (25 bp)
CTTCCGATTTAGCAGGTTGTACAAC
NONE
OsAffx.16451.1.A1_at--753--9291Chr07:16533313..16533337 (25 bp)
TCCGCGGCCGATTCAGTAAACGTTG
NONE
OsAffx.16451.1.A1_at--870--8411Chr07:16533308..16533332 (25 bp)
GGCCGATTCAGTAAACGTTGTTAAG
NONE
OsAffx.16451.1.A1_at--388--2271Chr07:16533296..16533320 (25 bp)
AAACGTTGTTAAGATAGCAAATCGT
NONE
Target Sequence 
TTGGCACTAGGCCAGCTGGTGAACCCTCAGTTGTTAATGAGAGAGCAGCCACAGCATAGTGGGCAGGTTGTGAATCGGCC
GACGCAAGATCAAGTTGCTGCCATGTTTCTGCCGCCTCAACCTGCTGTTGATCCAATACAGCAGCAGCCGGTTCAACAGA
CACTTCCGATTTAGCAGGTTGTACAACCAATCCAGCAACAAGTTGTGCAACCAGTCCAGCAAACGCCACCAAGGCAACAG
CCTCCGCGGCCGATTCAGTAAACGTTGTTAAGATAGCAAATCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16451.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis