Browse Element(s) Details


OsAffx.28297.1.S1_at

Description tigr:9635.m00545
TID=OsAffx.28297.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g060609/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g06020NANA7+2909158..2915907retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g06030Os.45976.1.S1_x_at3/117+2921657..2925402transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g06040Os.46306.1.S1_x_at4/117+2927829..2930921transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g06050OsAffx.16112.1.S1_at10/117+2933971..2935109hypothetical protein
LOC_Os07g06060Os.47878.1.S1_at10/117+2938593..2941125expressed protein
LOC_Os07g06060OsAffx.28297.1.S1_at9/117+2938593..2941125expressed protein
LOC_Os07g06070Os.36178.2.S1_at11/117+2941639..2942167expressed protein
LOC_Os07g06080Os.5026.1.S1_at11/117+2943527..2945080FAD dependent oxidoreductase family protein, expressed
LOC_Os07g06090Os.14155.1.S1_at9/117+2945077..2947478expressed protein
LOC_Os07g06100OsAffx.28298.1.S1_at11/117+2951661..2952669hypothetical protein
LOC_Os07g06110OsAffx.16451.1.A1_x_at5/117+2958537..2965499retrotransposon protein, putative, unclassified
LOC_Os07g06110OsAffx.16451.1.A1_at2/117+2958537..2965499retrotransposon protein, putative, unclassified
LOC_Os07g06110Os.45161.1.A1_x_at2/117+2958537..2965499retrotransposon protein, putative, unclassified
LOC_Os07g06110OsAffx.8279.1.S1_at1/117+2958537..2965499retrotransposon protein, putative, unclassified
LOC_Os07g06110OsAffx.8201.1.S1_x_at1/117+2958537..2965499retrotransposon protein, putative, unclassified
LOC_Os07g06110OsAffx.22699.1.S1_x_at1/117+2958537..2965499retrotransposon protein, putative, unclassified
LOC_Os07g06120NANA7+2966018..2969022hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28297.1.S1_at--925--9251Chr07:2939787..2939811 (25 bp)
TCCTCTGGTGAAAGTGACATGGAAT
LOC_Os07g06060
OsAffx.28297.1.S1_at--925--2411Chr07:2939761..2939785 (25 bp)
AAAAAATTCGCAGGCCCAGTGGTAT
LOC_Os07g06060
OsAffx.28297.1.S1_at--128--5011Chr07:2939752..2939776 (25 bp)
GCAGGCCCAGTGGTATTTTATCAAA
LOC_Os07g06060
OsAffx.28297.1.S1_at--149--911Chr07:2939728..2939752 (25 bp)
AGGCATGCGGATTGGATGTTATATT
LOC_Os07g06060
OsAffx.28297.1.S1_at--736--6791Chr07:2939711..2939735 (25 bp)
GTTATATTATCAAAGGCGCACGGAT
LOC_Os07g06060
OsAffx.28297.1.S1_at--847--4111Chr07:2939695..2939719 (25 bp)
CGCACGGATGGGATGGCTTATTATC
LOC_Os07g06060
OsAffx.28297.1.S1_at--305--10212Chr02:19386471..19386491 (21 bp)
TATTATCAAATTTCTCGGTCCGGGG
NONE
OsAffx.28297.1.S1_at--1074--4951Chr07:2939198..2939657 (25 bp)
GCATCTTCTGTCCAGAAGGTCGCGT
LOC_Os07g06060
OsAffx.28297.1.S1_at--1136--3871Chr07:2939191..2939650 (25 bp)
CTGTCCAGAAGGTCGCGTCTCGTGG
LOC_Os07g06060
OsAffx.28297.1.S1_at--593--5651Chr07:2936775..2936799 (25 bp)
GACAGACGTGTCCTTATGTTGCTTT
NONE
OsAffx.28297.1.S1_at--73--3431Chr07:2936773..2936797 (25 bp)
CAGACGTGTCCTTATGTTGCTTTTG
NONE
Target Sequence 
TCCTCTGGTGAAAGTGACATGGAATCAAAAAATTCGCAGGCCCAGTGGTATTTTATCAAAGGCATGCGGATTGGATGTTA
TATTATCAAAGGCGCACGGATGGGATGGCTTATTATCAAATTTCTCGGTCCGGGGTATAGGTAGAATAGTTTCTGCATCT
TCTGTCCAGAAGGTCGCGTCTCGTGGTTGCTCAAACGGAGGTGGGAGGTGCGCCAAGGTGGCAGATTTGGCGGAGATGAA
CGGCAGGATAAATATGGTGGAGTTTGAGCTGAAGCGGGAGGTGCAACTGATGAAGTTCGCAGTTGAAAAACAAAGAGCAA
TGGCAAGGGTTGAGATGATGGAGGCTGAGGCAAACAGGATGCAGTTTCGCTTCAGACTCATGTGTGGTCTTGTATGGGGT
GGATCGCTGGTCTACATAGCAAGTCATAGGGGAAATGAAGGAGATATTATAGAAGAAATGGAAAGAGACAGACGTGTCCT
TATGTTGCTTTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28297.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis