Browse Element(s) Details


Os.47878.1.S1_at

Description gb:AK111389.1
DB_XREF= gi:32996598
TID=Os.47878.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.47878 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-182-C03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-182-C03, full insert sequence.
FL= gb:AK111389.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0606010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g06020NANA7+2909158..2915907retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g06030Os.45976.1.S1_x_at3/117+2921657..2925402transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g06040Os.46306.1.S1_x_at4/117+2927829..2930921transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g06050OsAffx.16112.1.S1_at10/117+2933971..2935109hypothetical protein
LOC_Os07g06060Os.47878.1.S1_at10/117+2938593..2941125expressed protein
LOC_Os07g06060OsAffx.28297.1.S1_at9/117+2938593..2941125expressed protein
LOC_Os07g06070Os.36178.2.S1_at11/117+2941639..2942167expressed protein
LOC_Os07g06080Os.5026.1.S1_at11/117+2943527..2945080FAD dependent oxidoreductase family protein, expressed
LOC_Os07g06090Os.14155.1.S1_at9/117+2945077..2947478expressed protein
LOC_Os07g06100OsAffx.28298.1.S1_at11/117+2951661..2952669hypothetical protein
LOC_Os07g06110OsAffx.16451.1.A1_x_at5/117+2958537..2965499retrotransposon protein, putative, unclassified
LOC_Os07g06110OsAffx.16451.1.A1_at2/117+2958537..2965499retrotransposon protein, putative, unclassified
LOC_Os07g06110Os.45161.1.A1_x_at2/117+2958537..2965499retrotransposon protein, putative, unclassified
LOC_Os07g06110OsAffx.8279.1.S1_at1/117+2958537..2965499retrotransposon protein, putative, unclassified
LOC_Os07g06110OsAffx.8201.1.S1_x_at1/117+2958537..2965499retrotransposon protein, putative, unclassified
LOC_Os07g06110OsAffx.22699.1.S1_x_at1/117+2958537..2965499retrotransposon protein, putative, unclassified
LOC_Os07g06120NANA7+2966018..2969022hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47878.1.S1_at--785--10031Chr07:2938833..2938857 (25 bp)
TAGAGGTGGCTACTGTCTTGTTTGC
LOC_Os07g06060
Os.47878.1.S1_at--189--6851Chr07:2938814..2938838 (25 bp)
GTTTGCTGCATCTGTGAGGTCAAAA
LOC_Os07g06060
Os.47878.1.S1_at--968--6411Chr07:2938769..2938793 (25 bp)
GATCTTTGATGTAGCCAACAGGCAA
LOC_Os07g06060
Os.47878.1.S1_at--639--9771Chr07:2938710..2938734 (25 bp)
TAATGGATAGCGCTAGACCCGTGAG
LOC_Os07g06060
Os.47878.1.S1_at--767--5811Chr07:2938695..2938719 (25 bp)
GACCCGTGAGGAACTACTGTGCACA
LOC_Os07g06060
Os.47878.1.S1_at--1083--7471Chr07:2938667..2938691 (25 bp)
GTGTGTGATGCTAGAGTGTGCTCCT
LOC_Os07g06060
Os.47878.1.S1_at--145--1111Chr07:2938653..2938677 (25 bp)
AGTGTGCTCCTACACATTAGCCTAT
LOC_Os07g06060
Os.47878.1.S1_at--496--151Chr07:2938638..2938662 (25 bp)
ATTAGCCTATGCATCCCTCTGATGG
LOC_Os07g06060
Os.47878.1.S1_at--573--4191Chr07:2938624..2938648 (25 bp)
CCCTCTGATGGTTTTTTGTCTGTGA
LOC_Os07g06060
Os.47878.1.S1_at--717--7171Chr07:2938607..2938631 (25 bp)
GTCTGTGAGAGTTCATCTGCCTGCA
LOC_Os07g06060
Os.47878.1.S1_at--703--9491Chr07:2938592..2938616 (25 bp)
TCTGCCTGCAATGTGAGTCTATCCA
NONE
Target Sequence 
TAGAGGTGGCTACTGTCTTGTTTGCTGCATCTGTGAGGTCAAAANCATAGCACTGATGGAACTATGATCTTTGATGTAGC
CAACAGGCAATTTATATTAGCTAGGGCCTAGAAAATGCCTTCAGTAATGGATAGCGCTAGACCCGTGAGGAACTACTGTG
CACATATGTGTGTGATGCTAGAGTGTGCTCCTACACATTAGCCTATGCATCCCTCTGATGGTTTTTTGTCTGTGAGAGTT
CATCTGCCTGCAATGTGAGTCTATCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47878.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis