Browse Element(s) Details


OsAffx.16458.1.S1_at

Description tigr:9635.m02801
TID=OsAffx.16458.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=DnaJ domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2880011/11DnaJ domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g28770Os.45976.1.S1_at2/117+16838430..16842074transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g28770Os.45976.1.S1_x_at2/117+16838430..16842074transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g28780Os.46306.1.S1_x_at3/117+16845108..16848037transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g28790Os.50313.1.S1_at11/117+16855498..16860933PAP_fibrillin family protein, expressed
LOC_Os07g28800OsAffx.16458.1.S1_at11/117+16861585..16865428DnaJ domain containing protein
LOC_Os07g28810OsAffx.16459.1.S1_at11/117+16867599..16868610expressed protein
LOC_Os07g28820Os.427.1.S1_at11/117+16868774..16873661Ribonuclease 2-5A family protein, expressed
LOC_Os07g28830NANA7+16873884..16875314hypothetical protein
LOC_Os07g28840Os.9542.1.A1_at11/117+16885207..16888668SET domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16458.1.S1_at--621--5231Chr07:16864146..16864169 (24 bp)
GAATATGCTGAGTACCTCTTCCAGA
LOC_Os07g28800
OsAffx.16458.1.S1_at--256--6831Chr07:16862849..16862873 (25 bp)
GTTTCCGCCCACATGATTTTTATTT
LOC_Os07g28800
OsAffx.16458.1.S1_at--310--5551Chr07:16862560..16862584 (25 bp)
GAAACGGTGTTTCGCAATGCTTTCC
LOC_Os07g28800
OsAffx.16458.1.S1_at--736--3011Chr07:16862545..16862569 (25 bp)
AATGCTTTCCGTGGGCAACAGACAT
LOC_Os07g28800
OsAffx.16458.1.S1_at--552--5591Chr07:16862484..16862508 (25 bp)
GAAATCACAGACGTTCTCATTCAGA
LOC_Os07g28800
OsAffx.16458.1.S1_at--215--8891Chr07:16862426..16862450 (25 bp)
TGAGGATGAAACACCCGCACAGACG
LOC_Os07g28800
OsAffx.16458.1.S1_at--58--1031Chr07:16862400..16862424 (25 bp)
AGGTATCTTTGGCACGGCAGGCACT
LOC_Os07g28800
OsAffx.16458.1.S1_at--903--4991Chr07:16862384..16862408 (25 bp)
GCAGGCACTTGGATTGAGTACTTCT
LOC_Os07g28800
OsAffx.16458.1.S1_at--989--3891Chr07:16862361..16862385 (25 bp)
CTGGTCCACTGAAACTCGAAGATGT
LOC_Os07g28800
OsAffx.16458.1.S1_at--140--1651Chr07:16862182..16862356 (25 bp)
AGCGCATACCGGACATGTGCACTTA
LOC_Os07g28800
OsAffx.16458.1.S1_at--194--2971Chr07:16861650..16862161 (25 bp)
AATGGCTCAACGAAGGCTACTGCAG
LOC_Os07g28800
Target Sequence 
GAATATGCTGAGTACCTCTTCCAGAGTTGGCGGGATGAAGATGACAAAAATGATGAATCAAGTGGACCTTCTTGGTTCAG
GGGACACCGTTGGGTCAGGAATCCAAAGAATAATGGTTTCCGCCCACATGATTTTTATTTTGGAAACTTCAGAAGCAGGG
GTGGATTTGAGTTTTGCACAAGTGATGAAGATGAACCGGAAACGGTGTTTCGCAATGCTTTCCGTGGGCAACAGACATTT
TATTGGTCTTTTGATTCTGATGATTTTTGTCAGAGAAATCACAGACGTTCTCATTCAGAAAGTTCCAGACGTTGGAGTTA
TGAGACAGATGATGAGGATGAAACACCCGCACAGACGGAGGTATCTTTGGCACGGCAGGCACTTGGATTGAGTACTTCTG
GTCCACTGAAACTCGAAGATGTTAAAAGCGCATACCGGACATGTGCACTTAGATGGCACCCAGATCGTCACAATGGCTCA
ACGAAGGCTACTGCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16458.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis