Browse Element(s) Details


OsAffx.16501.1.S1_at

Description tigr:9635.m03037
TID=OsAffx.16501.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3102011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g30980Os.9401.1.S1_at11/117+18336521..18349942UvrD/REP helicase family protein, putative, expressed
LOC_Os07g30990OsAffx.5488.1.S1_x_at11/117+18353306..18353945Ubiquitin, putative
LOC_Os07g31000NANA7+18356514..18356864expressed protein
LOC_Os07g31010Os.52939.1.S1_at6/117+18358468..18362000hypothetical protein
LOC_Os07g31020OsAffx.16501.1.S1_at11/117+18369099..18371046hypothetical protein
LOC_Os07g31030OsAffx.16502.1.S1_at11/117+18372801..18374033hypothetical protein
LOC_Os07g31040NANA7+18378560..18380977retrotransposon protein, putative, unclassified
LOC_Os07g31050NANA7+18381962..18385354retrotransposon protein, putative, unclassified
LOC_Os07g31060NANA7+18386256..18389547retrotransposon protein, putative, unclassified
LOC_Os07g31070OsAffx.28688.1.S1_at11/117+18392051..18397365expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16501.1.S1_at--352--1111Chr07:18370636..18370660 (25 bp)
AGTGTCCCCGGATTGTTGATGCCAC
LOC_Os07g31020
OsAffx.16501.1.S1_at--451--10771Chr07:18370651..18370675 (25 bp)
TTGATGCCACTGCTCAGTTGGGAGA
LOC_Os07g31020
OsAffx.16501.1.S1_at--926--1651Chr07:18370700..18370724 (25 bp)
AGCGCGTGGCTGAGCTCATAGACCT
LOC_Os07g31020
OsAffx.16501.1.S1_at--75--5991Chr07:18370740..18370764 (25 bp)
GAGACTGTGGGTTTGTCCCTGGTAC
LOC_Os07g31020
OsAffx.16501.1.S1_at--785--8631Chr07:18370753..18370777 (25 bp)
TGTCCCTGGTACCATTACTTCGATA
LOC_Os07g31020
OsAffx.16501.1.S1_at--606--10331Chr07:18370793..18370817 (25 bp)
TTTATCTTGGGTGCGGCCGGGACAA
LOC_Os07g31020
OsAffx.16501.1.S1_at--1016--3411Chr07:18370848..18370872 (25 bp)
CAGAAATCAGGTGGGCTCGCACGCT
LOC_Os07g31020
OsAffx.16501.1.S1_at--71--8731Chr07:18370872..18370896 (25 bp)
TGTCGTCTGCTTCGCATATCGATTC
LOC_Os07g31020
OsAffx.16501.1.S1_at--584--631Chr07:18370912..18370936 (25 bp)
ATGCATGTGCTCGTGTTGGACAACC
LOC_Os07g31020
OsAffx.16501.1.S1_at--209--691Chr07:18370943..18370967 (25 bp)
ATGACGGCCCACAACGGTGGATCGA
LOC_Os07g31020
OsAffx.16501.1.S1_at--408--1371Chr07:18370974..18370998 (25 bp)
AGAGCTGGATGCGATCTTCACCCTG
LOC_Os07g31020
Target Sequence 
AGTGTCCCCGGATTGTTGATGCCACTGCTCAGTTGGGAGAAGCACAGCGCCGGGCTTACCCGGGAGCGCGTGGCTGAGCT
CATAGACCTCGGCCCCTGCATTGGGAGACTGTGGGTTTGTCCCTGGTACCATTACTTCGATACCGATAATGGCTGGGTTT
ATCTTGGGTGCGGCCGGGACAAACTTGATAGGGACGATAGCAAAGAGCGCTACAGAAATCAGGTGGGCTCGCACGCTGTC
GTCTGCTTCGCATATCGATTCTGCGAAAATGGTGAGATGCATGTGCTCGTGTTGGACAACCATGATGATGACGGCCCACA
ACGGTGGATCGACGTTGAAGAGCTGGATGCGATCTTCACCCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16501.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis