Browse Element(s) Details


OsAffx.16502.1.S1_at

Description tigr:9635.m03038
TID=OsAffx.16502.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3103011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g30980Os.9401.1.S1_at11/117+18336521..18349942UvrD/REP helicase family protein, putative, expressed
LOC_Os07g30990OsAffx.5488.1.S1_x_at11/117+18353306..18353945Ubiquitin, putative
LOC_Os07g31000NANA7+18356514..18356864expressed protein
LOC_Os07g31010Os.52939.1.S1_at6/117+18358468..18362000hypothetical protein
LOC_Os07g31020OsAffx.16501.1.S1_at11/117+18369099..18371046hypothetical protein
LOC_Os07g31030OsAffx.16502.1.S1_at11/117+18372801..18374033hypothetical protein
LOC_Os07g31040NANA7+18378560..18380977retrotransposon protein, putative, unclassified
LOC_Os07g31050NANA7+18381962..18385354retrotransposon protein, putative, unclassified
LOC_Os07g31060NANA7+18386256..18389547retrotransposon protein, putative, unclassified
LOC_Os07g31070OsAffx.28688.1.S1_at11/117+18392051..18397365expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16502.1.S1_at--951--2971Chr07:18372837..18372861 (25 bp)
AATGGTGGGTTAGCGCACTGGACAA
LOC_Os07g31030
OsAffx.16502.1.S1_at--788--8471Chr07:18372927..18372951 (25 bp)
TGGCGAGAACTCGATCGGCCTATAT
LOC_Os07g31030
OsAffx.16502.1.S1_at--17--491Chr07:18372940..18372964 (25 bp)
ATCGGCCTATATGCGTTCGCTTCAA
LOC_Os07g31030
OsAffx.16502.1.S1_at--394--10511Chr07:18372960..18372984 (25 bp)
TTCAACGCCCATTCTGTCAGGAGAG
LOC_Os07g31030
OsAffx.16502.1.S1_at--61--2891Chr07:18372991..18373015 (25 bp)
AAGGGATTCAGACAGCACACACGGT
LOC_Os07g31030
OsAffx.16502.1.S1_at--878--3291Chr07:18373006..18373030 (25 bp)
CACACACGGTGCTGGACTGCTGGGA
LOC_Os07g31030
OsAffx.16502.1.S1_at--357--7991Chr07:18373410..18373434 (25 bp)
GGATGTTACCGTGGCCCAACCGGCA
LOC_Os07g31030
OsAffx.16502.1.S1_at--1033--5171Chr07:18373861..18373882 (22 bp)
GCAAGTTCTTCTCCGACGTGGACAG
LOC_Os07g31030
OsAffx.16502.1.S1_at--348--8131Chr07:18373877..18373901 (25 bp)
GGACAGCTACACCTTCTTGGACGTA
LOC_Os07g31030
OsAffx.16502.1.S1_at--661--7691Chr07:18373942..18373966 (25 bp)
GGGTCAATATCTATACGCGGAGGGA
LOC_Os07g31030
OsAffx.16502.1.S1_at--853--6811Chr07:18373976..18374000 (25 bp)
GTTTTTCCACGCCAAGAGCAGGTTC
LOC_Os07g31030
Target Sequence 
AATGGTGGGTTAGCGCACTGGACAAGAACAGAAGAACTAGCTGAGGGGAGCGGGGGAGGAAAGCTCACCAGGGCCTCCCT
GCAGGTGGCGTGGCGAGAACTCGATCGGCCTATATGCGTTCGCTTCAACGCCCATTCTGTCAGGAGAGTAAGGCAAGGGA
TTCAGACAGCACACACGGTGCTGGACTGCTGGGAGGGATGTTACCGTGGCCCAACCGGCAAGTTCTTCTCCGACGTGGAC
AGCTACACCTTCTTGGACGTACGCCACCTAGACCCCGCCACCGCTCGCTGGCCTCTGTTCGGGGTCAATATCTATACGCG
GAGGGAGATGGCCAAGTTTTTCCACGCCAAGAGCAGGTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16502.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis