Browse Element(s) Details


OsAffx.16557.1.S1_at

Description tigr:9635.m03425
TID=OsAffx.16557.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Peroxidase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3467011/11Peroxidase 1 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g34630OsAffx.16556.1.S1_at11/117+20760328..20761107hypothetical protein
LOC_Os07g34640Os.27195.1.S1_at10/117+20763084..20767891expressed protein
LOC_Os07g34650Os.27798.1.S1_a_at11/117+20767406..20770653expressed protein
LOC_Os07g34660OsAffx.28751.1.S1_x_at11/117+20779138..20779443hypothetical protein
LOC_Os07g34670OsAffx.16557.1.S1_at11/117+20781337..20783022Peroxidase 1 precursor, putative, expressed
LOC_Os07g34680OsAffx.28752.1.S1_at11/117+20783811..20784690hypothetical protein
LOC_Os07g34690Os.57292.1.S1_at11/117+20788143..20789013expressed protein
LOC_Os07g34700NANA7+20794387..20796028retrotransposon protein, putative, unclassified
LOC_Os07g34710Os.53161.1.S1_x_at11/117+20801612..20803666Peroxidase 27 precursor, putative, expressed
LOC_Os07g34720OsAffx.16558.1.S1_at11/117+20805166..20805687Harpin-induced protein 1 containing protein
LOC_Os07g34730Os.14207.1.S1_at11/117+20806339..20810838Acyltransferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009269biological_processresponse to desiccation
GO:0009409biological_processresponse to cold
GO:0042538biological_processhyperosmotic salinity response
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0005783cellular_componentendoplasmic reticulum
GO:0004601molecular_functionperoxidase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16557.1.S1_at--468--6791Chr07:20782338..20782362 (25 bp)
GTTTTGGCCTGTACCAACTGGGCGG
LOC_Os07g34670
OsAffx.16557.1.S1_at--564--3251Chr07:20782352..20782376 (25 bp)
CAACTGGGCGGCTCGATGGAAAAAT
LOC_Os07g34670
OsAffx.16557.1.S1_at--19--8171Chr07:20782369..20782393 (25 bp)
GGAAAAATATCGAACGCCGCCGAGA
LOC_Os07g34670
OsAffx.16557.1.S1_at--340--2251Chr07:20782413..20782437 (25 bp)
AAATTCAGGCATGGCACAGCTGCAA
LOC_Os07g34670
OsAffx.16557.1.S1_at--870--9011Chr07:20782433..20782457 (25 bp)
TGCAAGCAGCGTTCGCCCATAAGAA
LOC_Os07g34670
OsAffx.16557.1.S1_at--172--2911Chr07:20782468..20782492 (25 bp)
AAGGATCTCGTCGTCCTATCGGGTG
LOC_Os07g34670
OsAffx.16557.1.S1_at--606--9531Chr07:20782625..20782649 (25 bp)
TCTACAACTACACCGGCGGGAACAG
LOC_Os07g34670
OsAffx.16557.1.S1_at--228--2771Chr07:20782774..20782798 (25 bp)
AAGAGATCGCCCAAGTTCGACACGG
LOC_Os07g34670
OsAffx.16557.1.S1_at--209--9371Chr07:20782790..20782814 (25 bp)
TCGACACGGGCTACTACACGCAGGT
LOC_Os07g34670
OsAffx.16557.1.S1_at--1161--10491Chr07:20782867..20782891 (25 bp)
TTCACCGGAGCCTACGTCAAGAAGC
LOC_Os07g34670
OsAffx.16557.1.S1_at--191--5671Chr07:20782909..20782933 (25 bp)
GACATGGAGTTCTTCGGTGACTTCG
LOC_Os07g34670
Target Sequence 
GTTTTGGCCTGTACCAACTGGGCGGCTCGATGGAAAAATATCGAACGCCGCCGAGACGGTTGATCTCCCGCCACCAAATT
CAGGCATGGCACAGCTGCAAGCAGCGTTCGCCCATAAGAACTTGACTGCCAAGGATCTCGTCGTCCTATCGGGTGCGCAC
ACCATCGGCTTCTCGCACTGCCAGCCGTTCCACGACCGCCTCTACAACTACACCGGCGGGAACAGGCTCAACGACGTCGA
CCCGGAGCTCGACCCGGCCTACCTCAACGAGCTCCGGTCCAAGTGCGGCGCCGCTGCCAGTGCCACTGCCAACGCCGACA
ACCCGGGGGTCATGGTGGAGATCTCCCCCAAGAGATCGCCCAAGTTCGACACGGGCTACTACACGCAGGTCGCGCGGCGC
CGCGGGCTGTTCCGGTCCGACGCCGTGCTGCTCGACGACGACTTCACCGGAGCCTACGTCAAGAAGCACGCGACGGGGCT
CTTTGACATGGAGTTCTTCGGTGACTTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16557.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis