Browse Element(s) Details


OsAffx.16603.1.S1_at

Description tigr:9635.m03771
TID=OsAffx.16603.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3793011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g37900NANA7+22736413..22744662retrotransposon protein, putative, unclassified
LOC_Os07g37910OsAffx.10252.1.S1_at10/117+22746738..22748972hypothetical protein
LOC_Os07g37920Os.36437.1.S1_at11/117+22753723..22755997NAM, putative, expressed
LOC_Os07g37930OsAffx.16603.1.S1_at11/117+22758973..22760328hypothetical protein
LOC_Os07g37940NANA7+22764427..22766233hypothetical protein
LOC_Os07g37950Os.30337.1.S1_at11/117+22772455..22773493disease resistance protein, putative, expressed
LOC_Os07g37960OsAffx.22483.1.S1_at11/117+22778414..22781911exostosin family protein, putative, expressed
LOC_Os07g37970OsAffx.16605.1.S1_at11/117+22783473..22785671Cytochrome P450 51, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16603.1.S1_at--832--3411Chr07:22759883..22759907 (25 bp)
CAGTTTTTGTTGGTCTTGGCCCGAG
LOC_Os07g37930
OsAffx.16603.1.S1_at--410--4611Chr07:22759930..22759954 (25 bp)
GCGACGAATTCTGTGCTTGTTTCAA
LOC_Os07g37930
OsAffx.16603.1.S1_at--647--1891Chr07:22759954..22759978 (25 bp)
ACGTTATATCGTTGTCGCTCTGTCA
LOC_Os07g37930
OsAffx.16603.1.S1_at--1136--1871Chr07:22760012..22760036 (25 bp)
ACGTCGCGTTCCACGGTGAGTTGGA
LOC_Os07g37930
OsAffx.16603.1.S1_at--152--10651Chr07:22760108..22760132 (25 bp)
TTCGCGTAGGGTCATGCATTGCTGT
LOC_Os07g37930
OsAffx.16603.1.S1_at--446--7291Chr07:22760131..22760155 (25 bp)
GTGCCTGTGCCAGTATGCGACACCA
LOC_Os07g37930
OsAffx.16603.1.S1_at--784--5631Chr07:22760149..22760173 (25 bp)
GACACCAACCTTTGCCAATATAGCG
LOC_Os07g37930
OsAffx.16603.1.S1_at--584--7391Chr07:22760191..22760215 (25 bp)
GTGATCGACAACTGGTGCCACTTTG
LOC_Os07g37930
OsAffx.16603.1.S1_at--1147--10711Chr07:22760213..22760237 (25 bp)
TTGCTCTCAGTTTCAGGCGGCCATA
LOC_Os07g37930
OsAffx.16603.1.S1_at--12--3951Chr07:22760256..22760280 (25 bp)
CGGCTTCATTAATTACGTGCTTCCA
LOC_Os07g37930
OsAffx.16603.1.S1_at--318--1911Chr07:22760270..22760294 (25 bp)
ACGTGCTTCCATTTTCCATTGCTAG
LOC_Os07g37930
Target Sequence 
CAGTTTTTGTTGGTCTTGGCCCGAGAATTGATATTGATTTGTTCGTAGCGACGAATTCTGTGCTTGTTTCAACGTTATAT
CGTTGTCGCTCTGTCAGCAGCAACAAGCTAGGTCGGGAGGAAGGGGAAGACGTCGCGTTCCACGGTGAGTTGGAGATCGA
TCGGTGCACGTCGCGTGGACCGCGACAAGGCCGCAGGGACAGCGCCGTGCGTGACCTCCTGTCGCTTCGCGTAGGGTCAT
GCATTGCTGTGCCTGTGCCAGTATGCGACACCAACCTTTGCCAATATAGCGTCAAGGCCGCCCCGCGCGTGATCGACAAC
TGGTGCCACTTTGCTCTCAGTTTCAGGCGGCCATATACAGTCGCAAACCGTGACGGCTTCATTAATTACGTGCTTCCATT
TTCCATTGCTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16603.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis