Browse Element(s) Details


OsAffx.16626.1.S1_at

Description tigr:9635.m03896
TID=OsAffx.16626.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3910011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g39040OsAffx.28818.1.S1_at9/117+23404939..23406846hypothetical protein
LOC_Os07g39060OsAffx.5574.1.S1_at10/117+23413891..23415192hypothetical protein
LOC_Os07g39070Os.47591.1.S1_s_at10/117+23417324..234207565-formyltetrahydrofolate cycloligase, putative, expressed
LOC_Os07g39080OsAffx.16624.1.S1_x_at11/117+23421183..23422211hypothetical protein
LOC_Os07g39080OsAffx.16624.1.S1_at11/117+23421183..23422211hypothetical protein
LOC_Os07g39090OsAffx.16625.1.S1_at11/117+23423711..23429192hypothetical protein
LOC_Os07g39100OsAffx.16626.1.S1_at11/117+23430025..23430687hypothetical protein
LOC_Os07g39110Os.55217.1.S1_at11/117+23431681..23433157expressed protein
LOC_Os07g39120Os.25190.1.A1_x_at11/117+23436812..23439851hypothetical protein
LOC_Os07g39120Os.25190.1.A1_at11/117+23436812..23439851hypothetical protein
LOC_Os07g39120OsAffx.16627.1.S1_at9/117+23436812..23439851hypothetical protein
LOC_Os07g39130NANA7+23441148..23441426hypothetical protein
LOC_Os07g39140OsAffx.28819.1.S1_at11/117+23442507..23442845hypothetical protein
LOC_Os07g39150OsAffx.32166.1218.S1_x_at9/117+23454664..23456106hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16626.1.S1_at--608--3431Chr07:23430581..23430605 (25 bp)
CAGAGGACGCCCACAGAGGAGGTAA
LOC_Os07g39100
OsAffx.16626.1.S1_at--135--6151Chr07:23430563..23430587 (25 bp)
GAGGTAATTACAAGCAGCGGCCGAT
LOC_Os07g39100
OsAffx.16626.1.S1_at--1024--9731Chr07:23430559..23430583 (25 bp)
TAATTACAAGCAGCGGCCGATATGC
LOC_Os07g39100
OsAffx.16626.1.S1_at--1017--5871Chr07:23430525..23430549 (25 bp)
GAGCGGTTGCCGATGCCGCCGCTAC
LOC_Os07g39100
OsAffx.16626.1.S1_at--456--5791Chr07:23430447..23430471 (25 bp)
GACGACTACGCCTATCGTGCGAGCA
LOC_Os07g39100
OsAffx.16626.1.S1_at--875--2011Chr07:23430443..23430467 (25 bp)
ACTACGCCTATCGTGCGAGCAAGAA
LOC_Os07g39100
OsAffx.16626.1.S1_at--627--4551Chr07:23430387..23430411 (25 bp)
GCGCGCATGCCGAACAACAGGACGA
LOC_Os07g39100
OsAffx.16626.1.S1_at--929--4091Chr07:23430377..23430401 (25 bp)
CGAACAACAGGACGACCAGACCGAC
LOC_Os07g39100
OsAffx.16626.1.S1_at--892--9331Chr07:23430327..23430351 (25 bp)
TCGCGCACCAAGGAAGAGAGCCATG
LOC_Os07g39100
OsAffx.16626.1.S1_at--318--9971Chr07:23430164..23430188 (25 bp)
TACCGGACTCGTTGACGGCGCAAGA
LOC_Os07g39100
OsAffx.16626.1.S1_at--56--7651Chr07:23430110..23430134 (25 bp)
GGGAGATCTCGCTGATGCGGGAGGA
LOC_Os07g39100
Target Sequence 
CAGAGGACGCCCACAGAGGAGGTAATTACAAGCAGCGGCCGATATGCCGGGGGGACGAGCGGTTGCCGATGCCGCCGCTA
CACAGCAAGCGCCGCCGCGACGAACACCACCGCCGGGACTACCACTACGACGACGACGACTACGCCTATCGTGCGAGCAA
GAAGAAGAAGCAGCAGGCGGCCGCTGAACAGGCGGCGCGCATGCCGAACAACAGGACGACCAGACCGACGACGCGGCGCG
CGTCGTCGTCGCGCTCGCGCACCAAGGAAGAGAGCCATGCCCGCGGTGGCGGCGCCGCGCCGCGACGCGAGAACAAGGAT
CGCAAGGACGGCGCCGGCGGGCGCCGCTCGCAGCGGCGCGCACCGACGATCAGCGGACCGCGCGTCCCGCCACCGGCGAC
GCCGCCTCCGGCGGCGCTACCGGACTCGTTGACGGCGCAAGACGCGCTGAGCGCGGCCGCGGCGAGAGCGAGGGAGATCT
CGCTGATGCGGGAGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16626.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis