Browse Element(s) Details


OsAffx.16698.1.S1_at

Description gb:NM_193067.1
DB_XREF= gi:34913217
GEN=P0506F02.29
TID=OsAffx.16698.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein~predicted by GeneMark.hmm etc. (P0506F02.29), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g435903/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g43580Os.25588.2.S1_x_at11/117+26073624..26075445Myb30, putative, expressed
LOC_Os07g43580Os.25588.1.S1_a_at11/117+26073624..26075445Myb30, putative, expressed
LOC_Os07g43590OsAffx.16698.2.S1_at11/117+26093374..26093963hypothetical protein
LOC_Os07g43590OsAffx.16698.2.S1_s_at11/117+26093374..26093963hypothetical protein
LOC_Os07g43590OsAffx.16698.1.S1_at3/117+26093374..26093963hypothetical protein
LOC_Os07g43600OsAffx.21305.1.S1_at11/117+26096444..26098219Ribonuclease T2 family protein
LOC_Os07g43610OsAffx.21304.1.S1_at10/117+26104575..26107569hypothetical protein
LOC_Os07g43610Os.55580.1.S1_at1/117+26104575..26107569hypothetical protein
LOC_Os07g43630Os.45173.1.S1_x_at1/117+26114122..26120070retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g43630OsAffx.20257.1.S1_at1/117+26114122..26120070retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g43630Os.47130.4.A1_x_at1/117+26114122..26120070retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16698.1.S1_at--792--8971Chr07:26093308..26093332 (25 bp)
TGAATACCCCAGTCGAGCAAACCGT
NONE
OsAffx.16698.1.S1_at--481--7651Chr07:26093371..26093484 (25 bp)
GGGATGCACCTCTGAGGTTCACGCA
NONE
OsAffx.16698.1.S1_at--496--7891Chr07:26093486..26093510 (25 bp)
GGTTACTTCTGGCTTGGCGAGCAAT
LOC_Os07g43590
OsAffx.16698.1.S1_at--1061--4911Chr07:26093497..26093521 (25 bp)
GCTTGGCGAGCAATTCCTGGGTTTC
LOC_Os07g43590
OsAffx.16698.1.S1_at--936--8951Chr07:26093522..26093653 (25 bp)
TGACATCTGTGAGTGACAAGCGCTA
LOC_Os07g43590
OsAffx.16698.1.S1_at--1134--831Chr07:26093953..26093977 (25 bp)
ATGGCAACTAGCTCCAGGACTGGTG
NONE
OsAffx.16698.1.S1_at--1039--9271Chr07:26094037..26094061 (25 bp)
TCCTGGTATCTTGGCAACTGCGGAA
NONE
OsAffx.16698.1.S1_at--873--5131Chr07:26094050..26094074 (25 bp)
GCAACTGCGGAAGGAGTGAAACTCC
NONE
OsAffx.16698.1.S1_at--651--2552Chr07:26094069..26094093 (25 bp)
AACTCCAAGGTTTTCAACTCTGCTC
NONE
OsAffx.16698.1.S1_at--622--10373Chr07:26094079..26094103 (25 bp)
TTTTCAACTCTGCTCTCTTCGGTCT
NONE
OsAffx.16698.1.S1_at--753--10555Chr08:1146536..1146611 (25 bp)
TTCTAGAGTCCATCCTCACTGAGGG
NONE
Target Sequence 
TGAATACCCCAGTCGAGCAAACCGTCTCCGACATGTTCGAAGCGTCCACCTCCTTCGTGCCGGGGGATGCACCTCTGAGG
TTCACGCACGGTTACTTCTGGCTTGGCGAGCAATTCCTGGGTTTCTGACATCTGTGAGTGACAAGCGCTACTCGGTGCGT
TTGGCATACCAGACGTTCTTCTATGGCCAACACACCTTTGCCTGTGATGATCTTATCTGGCATGCGAATGGTCTTGCTAA
ATGTAAGTCCTTCCTCTGGAGCTTGAGACGGGGAACCACATCCTCCTTGGCTACGTGTTCGCTCAGCAAGTCTGGCTCCG
TGTGCTGTCGCTTTCTGATTGGTCTACCCTCTCTCCTCCTCATGGCAACTAGCTCCAGGACTGGTGGCCATCTTCTAGGG
CATGCTTACCTGAGCATCTCCATGCCGGCTTCGACTCCTGAGTCCTCCTGGTATCTTGGCAACTGCGGAAGGAGTGAAAC
TCCAAGGTTTTCAACTCTGCTCTCTTCGGTCTCAGTGGTTCTAGAGTCCATCCTCACTGAGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16698.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis