Browse Element(s) Details


OsAffx.16698.2.S1_at

Description tigr:9635.m04371
TID=OsAffx.16698.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4359011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g43580Os.25588.2.S1_x_at11/117+26073624..26075445Myb30, putative, expressed
LOC_Os07g43580Os.25588.1.S1_a_at11/117+26073624..26075445Myb30, putative, expressed
LOC_Os07g43590OsAffx.16698.2.S1_at11/117+26093374..26093963hypothetical protein
LOC_Os07g43590OsAffx.16698.2.S1_s_at11/117+26093374..26093963hypothetical protein
LOC_Os07g43590OsAffx.16698.1.S1_at3/117+26093374..26093963hypothetical protein
LOC_Os07g43600OsAffx.21305.1.S1_at11/117+26096444..26098219Ribonuclease T2 family protein
LOC_Os07g43610OsAffx.21304.1.S1_at10/117+26104575..26107569hypothetical protein
LOC_Os07g43610Os.55580.1.S1_at1/117+26104575..26107569hypothetical protein
LOC_Os07g43630Os.45173.1.S1_x_at1/117+26114122..26120070retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g43630OsAffx.20257.1.S1_at1/117+26114122..26120070retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g43630Os.47130.4.A1_x_at1/117+26114122..26120070retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16698.2.S1_at--584--1491Chr07:26093773..26093797 (25 bp)
AGCAACATTGCTGGATGACCAATCT
LOC_Os07g43590
OsAffx.16698.2.S1_at--1016--5131Chr07:26093774..26093798 (25 bp)
GCAACATTGCTGGATGACCAATCTC
LOC_Os07g43590
OsAffx.16698.2.S1_at--489--2511Chr07:26093776..26093800 (25 bp)
AACATTGCTGGATGACCAATCTCCT
LOC_Os07g43590
OsAffx.16698.2.S1_at--826--2071Chr07:26093777..26093801 (25 bp)
ACATTGCTGGATGACCAATCTCCTC
LOC_Os07g43590
OsAffx.16698.2.S1_at--575--71Chr07:26093779..26093803 (25 bp)
ATTGCTGGATGACCAATCTCCTCCA
LOC_Os07g43590
OsAffx.16698.2.S1_at--393--10711Chr07:26093780..26093804 (25 bp)
TTGCTGGATGACCAATCTCCTCCAA
LOC_Os07g43590
OsAffx.16698.2.S1_at--381--9131Chr07:26093781..26093805 (25 bp)
TGCTGGATGACCAATCTCCTCCAAA
LOC_Os07g43590
OsAffx.16698.2.S1_at--1052--4711Chr07:26093782..26093806 (25 bp)
GCTGGATGACCAATCTCCTCCAAAA
LOC_Os07g43590
OsAffx.16698.2.S1_at--301--3911Chr07:26093783..26093807 (25 bp)
CTGGATGACCAATCTCCTCCAAAAG
LOC_Os07g43590
OsAffx.16698.2.S1_at--1098--8551Chr07:26093784..26093808 (25 bp)
TGGATGACCAATCTCCTCCAAAAGC
LOC_Os07g43590
OsAffx.16698.2.S1_at--508--511Chr07:26093814..26093838 (25 bp)
ATCGATAGCCACTCAGTCTACCCCT
LOC_Os07g43590
Target Sequence 
AGCAACATTGCTGGATGACCAATCTCCTCCAAAAGCGTGGCATCGATAGCCACTCAGTCTACCCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16698.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis