Browse Element(s) Details


OsAffx.16698.2.S1_s_at

Description tigr:9635.m04371
TID=OsAffx.16698.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4359011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g43580Os.25588.2.S1_x_at11/117+26073624..26075445Myb30, putative, expressed
LOC_Os07g43580Os.25588.1.S1_a_at11/117+26073624..26075445Myb30, putative, expressed
LOC_Os07g43590OsAffx.16698.2.S1_at11/117+26093374..26093963hypothetical protein
LOC_Os07g43590OsAffx.16698.2.S1_s_at11/117+26093374..26093963hypothetical protein
LOC_Os07g43590OsAffx.16698.1.S1_at3/117+26093374..26093963hypothetical protein
LOC_Os07g43600OsAffx.21305.1.S1_at11/117+26096444..26098219Ribonuclease T2 family protein
LOC_Os07g43610OsAffx.21304.1.S1_at10/117+26104575..26107569hypothetical protein
LOC_Os07g43610Os.55580.1.S1_at1/117+26104575..26107569hypothetical protein
LOC_Os07g43630Os.45173.1.S1_x_at1/117+26114122..26120070retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g43630OsAffx.20257.1.S1_at1/117+26114122..26120070retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g43630Os.47130.4.A1_x_at1/117+26114122..26120070retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16698.2.S1_s_at--1162--1111Chr07:26093640..26093664 (25 bp)
AGTGACAAGCGCTACTCGGTGCGTT
LOC_Os07g43590
OsAffx.16698.2.S1_s_at--30--7791Chr07:26093657..26093681 (25 bp)
GGTGCGTTTGGCATACCAGACGTTC
LOC_Os07g43590
OsAffx.16698.2.S1_s_at--786--3411Chr07:26093673..26093697 (25 bp)
CAGACGTTCTTCTATGGCCAACACA
LOC_Os07g43590
OsAffx.16698.2.S1_s_at--880--871Chr07:26093686..26093710 (25 bp)
ATGGCCAACACACCTTTGCCTGTGA
LOC_Os07g43590
OsAffx.16698.2.S1_s_at--303--2171Chr07:26093695..26093719 (25 bp)
ACACCTTTGCCTGTGATGATCTTAT
LOC_Os07g43590
OsAffx.16698.2.S1_s_at--1003--7391Chr07:26093707..26093731 (25 bp)
GTGATGATCTTATCTGGCATGCGAA
LOC_Os07g43590
OsAffx.16698.2.S1_s_at--407--3911Chr07:26093720..26093744 (25 bp)
CTGGCATGCGAATGGTCTTGCTAAA
LOC_Os07g43590
OsAffx.16698.2.S1_s_at--535--10711Chr07:26093737..26093761 (25 bp)
TTGCTAAATGTAAGTCCTTCCTCTG
LOC_Os07g43590
OsAffx.16698.2.S1_s_at--540--8171Chr07:26093863..26093887 (25 bp)
GGAACCACATCCTCCTTGGCTACGT
LOC_Os07g43590
OsAffx.16698.2.S1_s_at--126--10871Chr07:26093878..26093902 (25 bp)
TTGGCTACGTGTTCGCTCAGCAAGT
LOC_Os07g43590
OsAffx.16698.2.S1_s_at--814--9931Chr07:26093883..26093907 (25 bp)
TACGTGTTCGCTCAGCAAGTCTGGC
LOC_Os07g43590
Target Sequence 
AGTGACAAGCGCTACTCGGTGCGTTTGGCATACCAGACGTTCTTCTATGGCCAACACACCTTTGCCTGTGATGATCTTAT
CTGGCATGCGAATGGTCTTGCTAAATGTAAGTCCTTCCTCTGGTTTGCATTTCAGCAACATTGCTGGATGACCAATCTCC
TCCAAAAGCGTGGCATCGATAGCCACTCAGTCTACCCCTTTTGCGCTCAGGAGCTTGAGACGGGGAACCACATCCTCCTT
GGCTACGTGTTCGCTCAGCAAGTCTGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16698.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis