Browse Element(s) Details


OsAffx.16746.1.S1_at

Description tigr:9635.m04760
TID=OsAffx.16746.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4723011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g47180Os.20983.1.S1_at11/117+28204697..28209055transposon protein, putative, unclassified, expressed
LOC_Os07g47194OsAffx.16744.1.S1_at11/117+28208801..28220264GEX1, putative, expressed
LOC_Os07g47194Os.12427.1.S1_a_at11/117+28208801..28220264GEX1, putative, expressed
LOC_Os07g47194Os.12427.2.S1_x_at11/117+28208801..28220264GEX1, putative, expressed
LOC_Os07g47194Os.38106.2.S1_x_at11/117+28208801..28220264GEX1, putative, expressed
LOC_Os07g47194Os.38106.1.S1_at11/117+28208801..28220264GEX1, putative, expressed
LOC_Os07g47194Os.12427.1.S2_at11/117+28208801..28220264GEX1, putative, expressed
LOC_Os07g47194OsAffx.16743.1.S1_x_at11/117+28208801..28220264GEX1, putative, expressed
LOC_Os07g47194OsAffx.16743.1.S1_at10/117+28208801..28220264GEX1, putative, expressed
LOC_Os07g47194Os.56258.1.S1_at1/117+28208801..28220264GEX1, putative, expressed
LOC_Os07g47210Os.51144.1.S1_at11/117+28220891..28223204GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os07g47220OsAffx.22523.1.S1_at11/117+28224076..28224486hypothetical protein
LOC_Os07g47230OsAffx.16746.1.S1_at11/117+28226876..28230131Protein kinase domain containing protein, expressed
LOC_Os07g47240Os.37554.1.S1_at11/117+28231562..28232948expressed protein
LOC_Os07g47250Os.24995.1.S1_a_at11/117+28238772..28243716Lipase family protein, expressed
LOC_Os07g47260Os.32411.1.S1_at11/117+28245648..28248014expressed protein
LOC_Os07g47270Os.16760.1.S1_at11/117+28248349..28251962Serine/threonine-protein kinase RLCKVII, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16746.1.S1_at--687--1751Chr07:28229261..28229285 (25 bp)
ACCTGAAAGCGAGCAACGTTCTGTT
LOC_Os07g47230
OsAffx.16746.1.S1_at--630--6351Chr07:28229287..28229311 (25 bp)
GATGCCGAGATGAACGCCAAGATTT
LOC_Os07g47230
OsAffx.16746.1.S1_at--1036--4971Chr07:28229321..28229345 (25 bp)
GCATCGCTAGGATTTTCGGCTCAAA
LOC_Os07g47230
OsAffx.16746.1.S1_at--126--9451Chr07:28229336..28229360 (25 bp)
TCGGCTCAAATGCAGCTCAATCCAG
LOC_Os07g47230
OsAffx.16746.1.S1_at--43--311Chr07:28229601..28229625 (25 bp)
ATAGCTCCGGAGTACGCATTAGATG
LOC_Os07g47230
OsAffx.16746.1.S1_at--717--3591Chr07:28229617..28229641 (25 bp)
CATTAGATGGCGTTTGCTCGAGCAA
LOC_Os07g47230
OsAffx.16746.1.S1_at--848--2551Chr07:28229696..28229720 (25 bp)
AACTGGAGGCTCATATCGATACAAC
LOC_Os07g47230
OsAffx.16746.1.S1_at--77--5571Chr07:28229725..28229749 (25 bp)
GAAAGCTATACTGTCTCATCGCATA
LOC_Os07g47230
OsAffx.16746.1.S1_at--475--851Chr07:28229854..28229878 (25 bp)
ATGGCAGATGGCACGAGCTGATCGA
LOC_Os07g47230
OsAffx.16746.1.S1_at--216--5991Chr07:28229890..28229914 (25 bp)
GAGACAGGTATCATGCATCGATCAG
LOC_Os07g47230
OsAffx.16746.1.S1_at--805--511Chr07:28229906..28229930 (25 bp)
ATCGATCAGGACGTGCATGCAGGTG
LOC_Os07g47230
Target Sequence 
ACCTGAAAGCGAGCAACGTTCTGTTGGATGCCGAGATGAACGCCAAGATTTCAGATTTCGGCATCGCTAGGATTTTCGGC
TCAAATGCAGCTCAATCCAGTACTACCAGAATTGTTGGAACCNNNGGATACATAGCTCCGGAGTACGCATTAGATGGCGT
TTGCTCGAGCAAAGCGGATGTTTTCAGCTTCGGCGTGCTCATACTTGAGATCATCAGTGGCAAAAGAACTGGAGGCTCAT
ATCGATACAACGACGGAAAGCTATACTGTCTCATCGCATATGCTTGGCTGCTGTGGAAAGATGGCAGATGGCACGAGCTG
ATCGATGAATGTTTGGGAGACAGGTATCATGCATCGATCAGGACGTGCATGCAGGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16746.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis