Browse Element(s) Details


OsAffx.16753.1.S1_at

Description tigr:9635.m04807
TID=OsAffx.16753.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4769011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g47610OsAffx.29789.3.S1_x_at11/117+28460982..28466135hAT family dimerisation domain containing protein
LOC_Os07g47610OsAffx.29789.1.S1_x_at7/117+28460982..28466135hAT family dimerisation domain containing protein
LOC_Os07g47610OsAffx.31885.2.S1_x_at2/117+28460982..28466135hAT family dimerisation domain containing protein
LOC_Os07g47620Os.53572.1.S1_at11/117+28466708..28467888universal stress protein, putative, expressed
LOC_Os07g47620Os.8188.1.S1_s_at11/117+28466708..28467888universal stress protein, putative, expressed
LOC_Os07g47630Os.7106.1.S1_a_at11/117+28468085..28472460Pre-mRNA splicing factor SF2, putative, expressed
LOC_Os07g47640Os.10370.2.S1_x_at11/117+28472912..28473534Photosystem II reaction centre X protein containing protein, expressed
LOC_Os07g47640Os.10370.2.S1_at11/117+28472912..28473534Photosystem II reaction centre X protein containing protein, expressed
LOC_Os07g47650Os.53309.1.S1_at11/117+28474728..28478010Kelch motif family protein, expressed
LOC_Os07g47660OsAffx.28946.1.S1_at11/117+28478221..28478839expressed protein
LOC_Os07g47670Os.20501.1.S1_at11/117+28482570..28483508Hypoxia induced protein conserved region containing protein, expressed
LOC_Os07g47680NANA7+28484201..28484977transposon protein, putative, Pong sub-class
LOC_Os07g47690OsAffx.16753.1.S1_at11/117+28487115..28487633hypothetical protein
LOC_Os07g47700Os.7085.2.S1_x_at11/117+28493024..28496411NAD-dependent epimerase/dehydratase family protein, putative, expressed
LOC_Os07g47710Os.48988.1.S1_at8/117+28499227..2850069860S ribosomal protein L22-2, putative, expressed
LOC_Os07g47720Os.56867.1.S1_at11/117+28501369..28503801pentatricopeptide, putative, expressed
LOC_Os07g47730OsAffx.21897.5.S1_x_at4/117+28510359..28513299retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16753.1.S1_at--635--10651Chr07:28487146..28487170 (25 bp)
TTCCTACACCAGGTGCTCAATTGCT
LOC_Os07g47690
OsAffx.16753.1.S1_at--951--4831Chr07:28487160..28487184 (25 bp)
GCTCAATTGCTGGTGAATGGGATCA
LOC_Os07g47690
OsAffx.16753.1.S1_at--697--9911Chr07:28487187..28487211 (25 bp)
TACTCCTCTTTGGTGGATCTGATGG
LOC_Os07g47690
OsAffx.16753.1.S1_at--332--6411Chr07:28487202..28487412 (25 bp)
GATCTGATGGCTTTGATACCTGGTT
LOC_Os07g47690
OsAffx.16753.1.S1_at--380--6491Chr07:28487402..28487426 (25 bp)
GATACCTGGTTTCATGGATCTTGAG
LOC_Os07g47690
OsAffx.16753.1.S1_at--405--10531Chr07:28487412..28487436 (25 bp)
TTCATGGATCTTGAGTATGCTACAA
LOC_Os07g47690
OsAffx.16753.1.S1_at--1063--5571Chr07:28487445..28487469 (25 bp)
GAAATGGCCAATAAGTTCCGAGTTA
LOC_Os07g47690
OsAffx.16753.1.S1_at--481--6251Chr07:28487495..28487519 (25 bp)
GATGGATTGCAATATGCTACTAGAC
LOC_Os07g47690
OsAffx.16753.1.S1_at--559--4851Chr07:28487510..28487534 (25 bp)
GCTACTAGACAATCTGCACCTAACC
LOC_Os07g47690
OsAffx.16753.1.S1_at--437--9031Chr07:28487524..28487548 (25 bp)
TGCACCTAACCGAGGCAGCATTCAG
LOC_Os07g47690
OsAffx.16753.1.S1_at--1025--8251Chr07:28487537..28487561 (25 bp)
GGCAGCATTCAGAAACCGGTCCATG
LOC_Os07g47690
Target Sequence 
TTCCTACACCAGGTGCTCAATTGCTGGTGAATGGGATCATCTACTCCTCTTTGGTGGATCTGATGGCTTTGATACCTGGT
TTCATGGATCTTGAGTATGCTACAAGGAAAAAGGAAATGGCCAATAAGTTCCGAGTTATGTTGCTGATAAAATGCTTGAA
TTGGATGGATTGCAATATGCTACTAGACAATCTGCACCTAACCGAGGCAGCATTCAGAAACCGGTCCATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16753.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis