Browse Element(s) Details


OsAffx.16758.1.S1_at

Description tigr:9635.m04836
TID=OsAffx.16758.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Protein kinase domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4795011/11Protein kinase domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g47910OsAffx.6261.1.S1_x_at1/117+28611795..28614796retrotransposon protein, putative, unclassified
LOC_Os07g47920OsAffx.22699.1.S1_x_at3/117+28618272..28622033retrotransposon protein, putative, unclassified
LOC_Os07g47930NANA7+28625728..28626270hypothetical protein
LOC_Os07g47940OsAffx.16757.1.S1_at11/117+28628830..28629325expressed protein
LOC_Os07g47950OsAffx.16758.1.S1_at11/117+28636154..28641083Protein kinase domain containing protein
LOC_Os07g47960OsAffx.28948.1.S1_at11/117+28648014..28649925expressed protein
LOC_Os07g47960Os.19277.1.S1_at1/117+28648014..28649925expressed protein
LOC_Os07g47970NANA7+28653343..28653681hypothetical protein
LOC_Os07g47979NANA7+28655026..28655250NA
LOC_Os07g47990Os.5034.1.S1_at11/117+28658508..28660099Peroxidase 2 precursor, putative, expressed
LOC_Os07g48000NANA7+28661144..28666493retrotransposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000910biological_processcytokinesis
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0009816biological_processdefense response to pathogenic bacteria, incompatible interaction
GO:0016020cellular_componentmembrane
GO:0004611molecular_functionphosphoenolpyruvate carboxykinase activity
GO:0004672molecular_functionprotein kinase activity
GO:0004708molecular_functionMAP kinase kinase activity
GO:0004709molecular_functionMAP kinase kinase kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16758.1.S1_at--24--8291Chr07:28639981..28640005 (25 bp)
GGCATAAACTATCTCCACCAAAAAG
LOC_Os07g47950
OsAffx.16758.1.S1_at--490--6051Chr07:28640072..28640195 (25 bp)
GAGATTTCGGAAGTGGTGCTTTCAT
LOC_Os07g47950
OsAffx.16758.1.S1_at--1049--10311Chr07:28640190..28640214 (25 bp)
TTTCATGGGATCTGCTTCTTGTTTG
LOC_Os07g47950
OsAffx.16758.1.S1_at--671--611Chr07:28640249..28640273 (25 bp)
ATGCGTCTCCTGAGCTGTGGAACAT
LOC_Os07g47950
OsAffx.16758.1.S1_at--965--8511Chr07:28640266..28640290 (25 bp)
TGGAACATGCATACTCACAACGAGA
LOC_Os07g47950
OsAffx.16758.1.S1_at--260--711Chr07:28640725..28640749 (25 bp)
ATGTGTTTAGTCTCGGAATCCTGTA
LOC_Os07g47950
OsAffx.16758.1.S1_at--932--3031Chr07:28640741..28640765 (25 bp)
AATCCTGTACTTCGAGCTCTTTGGA
LOC_Os07g47950
OsAffx.16758.1.S1_at--342--10231Chr07:28640760..28640784 (25 bp)
TTTGGAGGTCCCACGAGCAGCAATG
LOC_Os07g47950
OsAffx.16758.1.S1_at--504--7791Chr07:28640897..28640921 (25 bp)
GGTGCCAGTACTAATCCGGATGCTA
LOC_Os07g47950
OsAffx.16758.1.S1_at--218--9251Chr07:28640911..28640935 (25 bp)
TCCGGATGCTACAGATTTCACCAAG
LOC_Os07g47950
OsAffx.16758.1.S1_at--906--6531Chr07:28640924..28640948 (25 bp)
GATTTCACCAAGACTGCGTCCAGCA
LOC_Os07g47950
Target Sequence 
GGCATAAACTATCTCCACCAAAAAGGATTCATTCACAGAGACATCAAGCCCAGTAATATATTTCTTGATAATTTGAACAA
TGTTAAGATTGGAGATTTCGGAAGTGGTGCTTTCATGGGATCTGCTTCTTGTTTGGGAAGGGGCAATAGGTTCTGGGGTA
CTCAGTTCCATGCGTCTCCTGAGCTGTGGAACATGCATACTCACAACGAGAAGACTGATGTGTTTAGTCTCGGAATCCTG
TACTTCGAGCTCTTTGGAGGTCCCACGAGCAGCAATGGAAGATACAAAAGACTGGAAAAACTTGAAAGCATTTTGAATAG
CAGCAAATGGAAGACTAATCCACTTCAAACATGGCTAAACTGCAATATTTCTAAAGGATGGGGTGGAAAGGTGCCAGTAC
TAATCCGGATGCTACAGATTTCACCAAGACTGCGTCCAGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16758.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis