Browse Element(s) Details


OsAffx.16821.1.S1_at

Description tigr:9636.m00325
TID=OsAffx.16821.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0404010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g04020OsAffx.19542.3.S1_x_at7/118+1937929..1943104retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g04020OsAffx.21754.1.S1_x_at2/118+1937929..1943104retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g04030OsAffx.5694.1.S1_at11/118+1944542..1945703hypothetical protein
LOC_Os08g04040OsAffx.16821.1.S1_at10/118+1953352..1955403hypothetical protein
LOC_Os08g04050NANA8+1957913..1959035retrotransposon protein, putative, unclassified
LOC_Os08g04060OsAffx.22699.1.S1_x_at1/118+1960790..1966794retrotransposon protein, putative, unclassified
LOC_Os08g04060OsAffx.20020.1.S1_x_at1/118+1960790..1966794retrotransposon protein, putative, unclassified
LOC_Os08g04060OsAffx.10039.1.S1_at1/118+1960790..1966794retrotransposon protein, putative, unclassified
LOC_Os08g04070OsAffx.5695.1.S1_at11/118+1967211..1968404hypothetical protein
LOC_Os08g04080Os.19099.1.S1_x_at2/118+1972270..1974459retrotransposon, putative, centromere-specific

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16821.1.S1_at--737--1971Chr08:1953944..1953968 (25 bp)
ACTATCGGCCCCTGATTACTAATAA
LOC_Os08g04040
OsAffx.16821.1.S1_at--841--3731Chr08:1953962..1953986 (25 bp)
CTAATAATCAGTCGGCTGCTCAGCC
LOC_Os08g04040
OsAffx.16821.1.S1_at--763--391Chr08:1954005..1954029 (25 bp)
ATCAGCTCAGCCAATAGCACCAGTA
LOC_Os08g04040
OsAffx.16821.1.S1_at--824--3091Chr08:1954017..1954041 (25 bp)
AATAGCACCAGTATCGATTCCTGCA
LOC_Os08g04040
OsAffx.16821.1.S1_at--136--3151Chr08:1954074..1954098 (25 bp)
AATTAATCCTCGGTTGTTAGTGAGA
LOC_Os08g04040
OsAffx.16821.1.S1_at--370--9791Chr08:1954136..1954160 (25 bp)
TAACTCAGGACCAGGTGGCGACTAT
LOC_Os08g04040
OsAffx.16821.1.S1_at--481--8391Chr08:1954152..1954176 (25 bp)
GGCGACTATGTTTTTACCAAATCCA
LOC_Os08g04040
OsAffx.16821.1.S1_at--847--1691Chr08:1954167..1954191 (25 bp)
ACCAAATCCACTAGTTGTCGATCCG
LOC_Os08g04040
OsAffx.16821.1.S1_at--597--2031Chr08:1954176..1954200 (25 bp)
ACTAGTTGTCGATCCGGCACAGCAA
LOC_Os08g04040
OsAffx.16821.1.S1_at--669--911Chr08:1954232..1954256 (25 bp)
AGGCTGTTCAGCTGTGGACTCCCGT
LOC_Os08g04040
OsAffx.16821.1.S1_at--241--7951NONE
GGATCAAGTAGTCTGTCCTACCAAT
NONE
Target Sequence 
ACTATCGGCCCCTGATTACTAATAATCAGTCGGCTGCTCAGCCAATTGCTCCCAACGCGCCATCAGCTCAGCCAATAGCA
CCAGTATCGATTCCTGCACCTGCTGCACCATCATCGGCACCAGGTCAACTAATTAATCCTCGGTTGTTAGTGAGAGAGCA
GCCACAGCATGCTGGTCAAAATGTCAATCGGCTAACTCAGGACCAGGTGGCGACTATGTTTTTACCAAATCCACTAGTTG
TCGATCCGGCACAGCAACAGCCGATTCAGCAGACGCCACCAAGGCAACAGGCTGTTCAGCTGTGGACTCCCGTTTTTATA
ACAGGAATCAATCGTGTAAACAGTACCATTTCCCTGGATCAAGTAGTCTGTCCTACCAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16821.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis