Browse Element(s) Details


OsAffx.5694.1.S1_at

Description tigr:9636.m00324
TID=OsAffx.5694.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0403011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g04020OsAffx.19542.3.S1_x_at7/118+1937929..1943104retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g04020OsAffx.21754.1.S1_x_at2/118+1937929..1943104retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g04030OsAffx.5694.1.S1_at11/118+1944542..1945703hypothetical protein
LOC_Os08g04040OsAffx.16821.1.S1_at10/118+1953352..1955403hypothetical protein
LOC_Os08g04050NANA8+1957913..1959035retrotransposon protein, putative, unclassified
LOC_Os08g04060OsAffx.22699.1.S1_x_at1/118+1960790..1966794retrotransposon protein, putative, unclassified
LOC_Os08g04060OsAffx.20020.1.S1_x_at1/118+1960790..1966794retrotransposon protein, putative, unclassified
LOC_Os08g04060OsAffx.10039.1.S1_at1/118+1960790..1966794retrotransposon protein, putative, unclassified
LOC_Os08g04070OsAffx.5695.1.S1_at11/118+1967211..1968404hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5694.1.S1_at--194--2551Chr08:1945180..1945204 (25 bp)
AACTCCCTTATTCAGAGAAGCCAGA
LOC_Os08g04030
OsAffx.5694.1.S1_at--290--6731Chr08:1945218..1945242 (25 bp)
GTTCTAATGAACACCACCAGCTACG
LOC_Os08g04030
OsAffx.5694.1.S1_at--175--2691Chr08:1945256..1945280 (25 bp)
AAGCTCAGTTGTGTTAGGTCCTCGG
LOC_Os08g04030
OsAffx.5694.1.S1_at--1136--2731Chr08:1945341..1945365 (25 bp)
AAGAAGCCTTTGACCTCCGGTGAGT
LOC_Os08g04030
OsAffx.5694.1.S1_at--410--8711Chr08:1945379..1945403 (25 bp)
TGTCCCCGTTGTTGGTATCTCAGAA
LOC_Os08g04030
OsAffx.5694.1.S1_at--162--6251Chr08:1945472..1945496 (25 bp)
GATGGTGCCTTACGAGTTCACTAAG
LOC_Os08g04030
OsAffx.5694.1.S1_at--447--3331Chr08:1945523..1945547 (25 bp)
CACTGCATTGTTCTCCGGGAAACTG
LOC_Os08g04030
OsAffx.5694.1.S1_at--850--2551Chr08:1945555..1945579 (25 bp)
AACTGAAGGCATACACTCTTGAGCA
LOC_Os08g04030
OsAffx.5694.1.S1_at--626--6031Chr08:1945587..1945611 (25 bp)
GAGATGCTCGGCATTCTCATGAGCG
LOC_Os08g04030
OsAffx.5694.1.S1_at--36--5331Chr08:1945620..1945644 (25 bp)
GAAGCGGTTCGGTCACCTCCGAAGA
LOC_Os08g04030
OsAffx.5694.1.S1_at--418--2751Chr08:1945647..1945671 (25 bp)
AAGAACGACCATGAGGCAGGCTCCT
LOC_Os08g04030
Target Sequence 
AACTCCCTTATTCAGAGAAGCCAGATGAAGGGATCTATGTTCTAATGAACACCACCAGCTACGGCAGCATCGGTGGAAGC
TCAGTTGTGTTAGGTCCTCGGGCCTGGGATCACTGCCACGTCTCGTTCCTGAAGGCTGATGACTTGGTCAGGCAATCAAA
CAAGAAGCCTTTGACCTCCGGTGAGTCACCTGCGCTTGCTGTCCCCGTTGTTGGTATCTCAGAACCCTTGAGGTTCCCCC
AGCTGCAGAAATGGATTGTTGAGAACTGTACAGCTACAGCATCAAGTGATGTGATGGTGCCTTACGAGTTCACTAAGCAT
TTCACTAACTGGGGTGACCTCTCCACTGCATTGTTCTCCGGGAAACTGACGGAAAAACTGAAGGCATACACTCTTGAGCA
GATGGCTGAGATGCTCGGCATTCTCATGAGCGGCAAGAGGGAAGCGGTTCGGTCACCTCCGAAGAAGAAGAACGACCATG
AGGCAGGCTCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5694.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis