Browse Element(s) Details


OsAffx.16840.1.S1_at

Description tigr:9636.m00489
TID=OsAffx.16840.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Major intrinsic protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0558011/11Major intrinsic protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g05530Os.25436.1.S1_at11/118+2958908..2961444small nuclear ribonucleoprotein E, putative, expressed
LOC_Os08g05530OsAffx.16839.1.S1_s_at9/118+2958908..2961444small nuclear ribonucleoprotein E, putative, expressed
LOC_Os08g05540OsAffx.5717.1.S1_at11/118+2962018..2962695expressed protein
LOC_Os08g05550Os.36897.1.A1_at11/118+2962962..2965420hypothetical protein
LOC_Os08g05560Os.53532.1.S1_at11/118+2966257..2970070Zinc finger, C3HC4 type family protein, expressed
LOC_Os08g05570Os.10774.1.S1_at10/118+2971047..2975917Monodehydroascorbate reductase, chloroplast precursor, putative, expressed
LOC_Os08g05580OsAffx.16840.1.S1_at11/118+2977397..2980418Major intrinsic protein, expressed
LOC_Os08g05580OsAffx.17990.1.S1_at1/118+2977397..2980418Major intrinsic protein, expressed
LOC_Os08g05590OsAffx.29048.1.S1_at11/118+2981082..2984672aquaporin NIP5.1, putative, expressed
LOC_Os08g05590Os.52150.1.S1_at2/118+2981082..2984672aquaporin NIP5.1, putative, expressed
LOC_Os08g05590Os.52150.1.S1_x_at1/118+2981082..2984672aquaporin NIP5.1, putative, expressed
LOC_Os08g05600OsAffx.16841.1.S1_at11/118+2990687..2992113Major intrinsic protein
LOC_Os08g05610NANA8+2994086..2995489Cytochrome P450 89A2, putative
LOC_Os08g05620NANA8+3000897..3002447Cytochrome P450 89A2, putative, expressed
LOC_Os08g05630Os.18267.1.S1_at11/118+3003288..3006183expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0016020cellular_componentmembrane
GO:0015250molecular_functionwater channel activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16840.1.S1_at--315--8251Chr08:2978434..2978458 (25 bp)
GGCACGTTCATCCTGGTCTTCACGG
LOC_Os08g05580
OsAffx.16840.1.S1_at--26--571Chr08:2978443..2978467 (25 bp)
ATCCTGGTCTTCACGGTGCTGTCCA
LOC_Os08g05580
OsAffx.16840.1.S1_at--324--9131Chr08:2978459..2978483 (25 bp)
TGCTGTCCACCGTCGTGATGGACGC
LOC_Os08g05580
OsAffx.16840.1.S1_at--1109--6611Chr08:2978688..2978712 (25 bp)
GTTCCTCGCCAAGGGCGTGTACCGG
LOC_Os08g05580
OsAffx.16840.1.S1_at--976--1611Chr08:2980115..2980139 (25 bp)
AGCTGGTGGCCATTGCGATTGCTGC
LOC_Os08g05580
OsAffx.16840.1.S1_at--988--8431Chr08:2980122..2980146 (25 bp)
GGCCATTGCGATTGCTGCAGCGATC
LOC_Os08g05580
OsAffx.16840.1.S1_at--358--10711Chr08:2980127..2980151 (25 bp)
TTGCGATTGCTGCAGCGATCATGAT
LOC_Os08g05580
OsAffx.16840.1.S1_at--476--71Chr08:2980132..2980156 (25 bp)
ATTGCTGCAGCGATCATGATGAACG
LOC_Os08g05580
OsAffx.16840.1.S1_at--19--4631Chr08:2980330..2980354 (25 bp)
GCGAGTACAGGCAAATGTGGATCTA
LOC_Os08g05580
OsAffx.16840.1.S1_at--668--8211Chr08:2980339..2980363 (25 bp)
GGCAAATGTGGATCTACCTCGTCGC
LOC_Os08g05580
OsAffx.16840.1.S1_at--1148--2971Chr08:2980343..2980367 (25 bp)
AATGTGGATCTACCTCGTCGCGCCG
LOC_Os08g05580
Target Sequence 
GGCACGTTCATCCTGGTCTTCACGGTGCTGTCCACCGTCGTGATGGACGCGCGGCACGGCGGCGCCGAGACCCTCGTCGG
CGTGGCGGCGTCGGCGGGGCTGGCCGTCGTCGCCGTCGTCCTCTCCGTGGTGCACATCTCGGGCTCCCACCTCAACCCGG
CGGTGAGCCTCGCCATGGCCGCGCTCGGCCACCTCCCGCCGGCCCACCTCCTCCCCTACGCGGCGGTGCAGACGGCGGCC
TCCCTCGCCGCCGCGTTCCTCGCCAAGGGCGTGTACCGGCCGGCGCGGCCGGCCGTCATGGCGACCGTGCCGGCCGCCGG
CGTCGGCGCCGGCGAGGCGTTCGTCGTCGAGAGCAAGGAGCTGGTGGCCATTGCGATTGCTGCAGCGATCATGATGAACG
CTCTCGTCGGAGGGCCGTCGACGGGGCCGTCGATGAACCCGGCGAGGACGATCGGGGCGGCGGTGGCGACGGGCGAGTAC
AGGCAAATGTGGATCTACCTCGTCGCGCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16840.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis