Browse Element(s) Details


OsAffx.16872.1.S1_at

Description tigr:9636.m00662
TID=OsAffx.16872.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0727011/11Cytokinin-O-glucosyltransferase 2, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g07240OsAffx.29075.1.S1_at11/118+4030933..4032737hypothetical protein
LOC_Os08g07250OsAffx.16871.1.S1_at11/118+4043663..4044171hypothetical protein
LOC_Os08g07260OsAffx.5734.1.S1_at11/118+4046809..4048291O-methyltransferase family protein
LOC_Os08g07270OsAffx.16872.1.S1_at11/118+4051250..4052767Cytokinin-O-glucosyltransferase 2, putative
LOC_Os08g07270OsAffx.16870.1.S1_x_at1/118+4051250..4052767Cytokinin-O-glucosyltransferase 2, putative
LOC_Os08g07280Os.52466.1.S1_at11/118+4059640..4062930expressed protein
LOC_Os08g07290Os.57432.1.S1_a_at11/118+4063464..4071319HEAT repeat family protein, expressed
LOC_Os08g07300Os.6557.1.S1_s_at11/118+4072322..4082539haloacid dehalogenase-like hydrolase family protein, putative, expressed
LOC_Os08g07300OsAffx.29076.1.S1_s_at11/118+4072322..4082539haloacid dehalogenase-like hydrolase family protein, putative, expressed
LOC_Os08g07300Os.53790.1.S1_at10/118+4072322..4082539haloacid dehalogenase-like hydrolase family protein, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0008194molecular_functionUDP-glycosyltransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0016758molecular_functiontransferase activity, transferring hexosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16872.1.S1_at--732--451Chr08:4052560..4052584 (25 bp)
ATCTACACCATTGGCCCCTTGGGAA
LOC_Os08g07270
OsAffx.16872.1.S1_at--106--8491Chr08:4052461..4052485 (25 bp)
TGGCTGGACACGCAACAGCCACGCT
LOC_Os08g07270
OsAffx.16872.1.S1_at--988--2471Chr08:4052348..4052472 (25 bp)
AACAGCCACGCTCCGCCGTGGAAAA
LOC_Os08g07270
OsAffx.16872.1.S1_at--533--4011Chr08:4052300..4052324 (25 bp)
CGCTACCGCCGGAGTTCGTCGTGGA
LOC_Os08g07270
OsAffx.16872.1.S1_at--875--7011Chr08:4052116..4052140 (25 bp)
GTACATCAACCGTAAGTACGCCTGC
LOC_Os08g07270
OsAffx.16872.1.S1_at--31--1191Chr08:4052102..4052126 (25 bp)
AGTACGCCTGCGAGTCATGGGACGT
LOC_Os08g07270
OsAffx.16872.1.S1_at--760--9131Chr08:4052094..4052118 (25 bp)
TGCGAGTCATGGGACGTCGGCCTCA
LOC_Os08g07270
OsAffx.16872.1.S1_at--288--1031Chr08:4052042..4052066 (25 bp)
AGGTCACCGCCCAAGTCAAGCAGGT
LOC_Os08g07270
OsAffx.16872.1.S1_at--2--2851Chr08:4052035..4052054 (20 bp)
AAGTCAAGCAGGTGATGGAGTCAGA
LOC_Os08g07270
OsAffx.16872.1.S1_at--194--4472Chr08:4014612..4014632 (21 bp)
GCCTCGGCGGATCATCTTACAAGAA
NONE
OsAffx.16872.1.S1_at--1075--9551Chr08:4051300..4051324 (25 bp)
TCTTACAAGAACCTGCAGAGCGTGG
LOC_Os08g07270
Target Sequence 
ATCTACACCATTGGCCCCTTGGGAACCCTCCTCAACCACGCCGCCGACGCCATCGGCGGCGGGCTGAGCCTGTGGAAGCA
GGACACCGAGTGCCTCGCGTGGCTGGACACGCAACAGCCACGCTCCGCCGTGGAAAACCTCGTGCCCGGTGGCCCAAACG
CGCTACCGCCGGAGTTCGTCGTGGAGACGGACGGCCGGCGGTGCTTGGCGACATGGTGCTCGCAGGAGCAGGTGTTGCGC
CACCCCGCCGTGGGGTGCTTCCTGACGCACAGCGGGTGGAACTCCAAGTGCGAGAGCGTGGCCTCCGGCGTGCCGATGGT
GTGCTGGCCGGTGTTCGCCGACCAGTACATCAACCGTAAGTACGCCTGCGAGTCATGGGACGTCGGCCTCAGGCTCGATG
AGGAGGTGAGGCGGGAGCAGGTCACCGCCCAAGTCAAGCAGGTGATGGAGTCAGAGGAGATGCGGCAGGACGCGGCGAGG
TGGAAGGCCAAGGCGGAGCAGGCGGCACGCCTCGGCGGATCATCTTACAAGAACCTGCAGAGCGTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16872.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis