Browse Element(s) Details


OsAffx.16886.1.S1_at

Description tigr:9636.m00736
TID=OsAffx.16886.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=NBS-LRR, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0794011/11NB-ARC domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g07900NANA8+4448215..4453879retrotransposon protein, putative, LINE subclass
LOC_Os08g07910OsAffx.29089.1.S1_at11/118+4454275..4454777expressed protein
LOC_Os08g07920OsAffx.29090.1.S1_at11/118+4455805..4457912disease resistance protein RPM1 homolog, putative
LOC_Os08g07930OsAffx.29091.1.S1_at11/118+4459685..4465429NB-ARC domain containing protein
LOC_Os08g07940OsAffx.29093.1.S1_at11/118+4468486..4478999NB-ARC domain containing protein
LOC_Os08g07940OsAffx.16886.1.S1_at11/118+4468486..4478999NB-ARC domain containing protein
LOC_Os08g07940Os.8747.3.S1_x_at2/118+4468486..4478999NB-ARC domain containing protein
LOC_Os08g07940OsAffx.30177.1.S1_x_at1/118+4468486..4478999NB-ARC domain containing protein
LOC_Os08g07940Os.27021.1.S1_x_at1/118+4468486..4478999NB-ARC domain containing protein
LOC_Os08g07940Os.27021.1.S1_at1/118+4468486..4478999NB-ARC domain containing protein
LOC_Os08g07940Os.50043.1.A1_at1/118+4468486..4478999NB-ARC domain containing protein
LOC_Os08g07940OsAffx.29172.1.S1_at1/118+4468486..4478999NB-ARC domain containing protein
LOC_Os08g07950OsAffx.16887.1.S1_at11/118+4481383..4489254NB-ARC domain containing protein, expressed
LOC_Os08g07960Os.15548.1.S1_at11/118+4490341..4495898mRNA-associated protein mrnp 41, putative, expressed
LOC_Os08g07970Os.20077.1.S1_at11/118+4499401..4501882Transcription factor TGA4, putative, expressed
LOC_Os08g07970Os.20077.3.S1_x_at11/118+4499401..4501882Transcription factor TGA4, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009626biological_processhypersensitive response
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16886.1.S1_at--751--10051Chr08:4468932..4468956 (25 bp)
TAGTTCTTTTGCCATTGATCCTCGA
LOC_Os08g07940
OsAffx.16886.1.S1_at--449--8851Chr08:4468947..4468971 (25 bp)
TGATCCTCGACTGCATGCACTTTAT
LOC_Os08g07940
OsAffx.16886.1.S1_at--1068--7831Chr08:4468993..4469017 (25 bp)
GGTATCGAGGGTCCAACAAAGCATA
LOC_Os08g07940
OsAffx.16886.1.S1_at--348--691Chr08:4469045..4469069 (25 bp)
ATGAGGATTCCTACAGACAACTTAA
LOC_Os08g07940
OsAffx.16886.1.S1_at--673--10491Chr08:4469114..4469138 (25 bp)
TTGCAAACCAAGTGTACCATGCCCT
LOC_Os08g07940
OsAffx.16886.1.S1_at--932--4331Chr08:4469130..4469154 (25 bp)
CCATGCCCTCAGAAGCCAATTTTTG
LOC_Os08g07940
OsAffx.16886.1.S1_at--315--3191Chr08:4469146..4469170 (25 bp)
CAATTTTTGTGCTCGGCTTTCATTT
LOC_Os08g07940
OsAffx.16886.1.S1_at--522--1191Chr08:4469172..4469196 (25 bp)
AGTTTCTCGAAAGCCCAATCTGGAA
LOC_Os08g07940
OsAffx.16886.1.S1_at--99--71Chr08:4469212..4469236 (25 bp)
ATTGCTCAAGGAGTGACGTTACCCA
LOC_Os08g07940
OsAffx.16886.1.S1_at--380--6231Chr08:4469251..4469275 (25 bp)
GATGGCGATATCCACCAATTGGTTG
LOC_Os08g07940
OsAffx.16886.1.S1_at--797--2351Chr08:4469780..4469802 (23 bp)
AAAGCCATCCACTAATTCGGAGATA
LOC_Os08g07940
Target Sequence 
TAGTTCTTTTGCCATTGATCCTCGACTGCATGCACTTTATGTGGAGGTTGACAGACTTGTGGGTATCGAGGGTCCAACAA
AGCATATTATTGACAAGTTAATAACCAATGAGGATGAGGATTCCTACAGACAACTTAAAGTGGTGTCAATTGTTGGTTTT
GGAGGTCTTGGTAAGACTACTCTTGCAAACCAAGTGTACCATGCCCTCAGAAGCCAATTTTTGTGCTCGGCTTTCATTTC
AGTTTCTCGAAAGCCCAATCTGGAAAAGGTTCTAAGAAAGATTGCTCAAGGAGTGACGTTACCCACTGGAAAAATACCGG
ATGGCGATATCCACCAATTGGTTGATAAACTCAGAACGTACATCCAAGATAAAAGCCATCCACTAATTCGGAGATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16886.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis