Browse Element(s) Details


OsAffx.16887.1.S1_at

Description tigr:9636.m00739
TID=OsAffx.16887.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=AF523679 CC-NBS-LRR resistance protein MLA13, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0795011/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g07920OsAffx.29090.1.S1_at11/118+4455805..4457912disease resistance protein RPM1 homolog, putative
LOC_Os08g07930OsAffx.29091.1.S1_at11/118+4459685..4465429NB-ARC domain containing protein
LOC_Os08g07940OsAffx.29093.1.S1_at11/118+4468486..4478999NB-ARC domain containing protein
LOC_Os08g07940OsAffx.16886.1.S1_at11/118+4468486..4478999NB-ARC domain containing protein
LOC_Os08g07940Os.8747.3.S1_x_at2/118+4468486..4478999NB-ARC domain containing protein
LOC_Os08g07940OsAffx.30177.1.S1_x_at1/118+4468486..4478999NB-ARC domain containing protein
LOC_Os08g07940Os.27021.1.S1_x_at1/118+4468486..4478999NB-ARC domain containing protein
LOC_Os08g07940Os.27021.1.S1_at1/118+4468486..4478999NB-ARC domain containing protein
LOC_Os08g07940Os.50043.1.A1_at1/118+4468486..4478999NB-ARC domain containing protein
LOC_Os08g07940OsAffx.29172.1.S1_at1/118+4468486..4478999NB-ARC domain containing protein
LOC_Os08g07950OsAffx.16887.1.S1_at11/118+4481383..4489254NB-ARC domain containing protein, expressed
LOC_Os08g07960Os.15548.1.S1_at11/118+4490341..4495898mRNA-associated protein mrnp 41, putative, expressed
LOC_Os08g07970Os.20077.1.S1_at11/118+4499401..4501882Transcription factor TGA4, putative, expressed
LOC_Os08g07970Os.20077.3.S1_x_at11/118+4499401..4501882Transcription factor TGA4, putative, expressed
LOC_Os08g07984NANA8+4509192..4509464NA

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009814biological_processdefense response to pathogen, incompatible interaction
GO:0005737cellular_componentcytoplasm
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16887.1.S1_at--1075--5611Chr08:4488528..4488552 (25 bp)
GACAACACTACAGCTTTTCACTATT
LOC_Os08g07950
OsAffx.16887.1.S1_at--6--5831Chr08:4488606..4488630 (25 bp)
GACCGATTCGGTTCTCAAGCTACAG
LOC_Os08g07950
OsAffx.16887.1.S1_at--1061--2951Chr08:4488978..4489002 (25 bp)
AATGGGAGACGGCTACCCATCACAT
LOC_Os08g07950
OsAffx.16887.1.S1_at--1051--2771Chr08:4489030..4489054 (25 bp)
AAGAGATCCTTCACTAGCATACCCA
LOC_Os08g07950
OsAffx.16887.1.S1_at--666--1511Chr08:4489058..4489082 (25 bp)
AGCAGAGTACCGTATGTAGCACTAT
LOC_Os08g07950
OsAffx.16887.1.S1_at--930--6951Chr08:4489073..4489097 (25 bp)
GTAGCACTATTAGGCTTGTGGCCCC
LOC_Os08g07950
OsAffx.16887.1.S1_at--650--10832Chr08:4489088..4489112 (25 bp)
TTGTGGCCCCTCTTGACCATAGAAT
LOC_Os08g07950
OsAffx.16887.1.S1_at--791--2332Chr08:4489114..4489138 (25 bp)
AAAGATCTTTCTAGCTTCCATGGAT
LOC_Os08g07950
OsAffx.16887.1.S1_at--108--3513Chr08:4489132..4489156 (25 bp)
CATGGATCTTCCATTCTTGCAGAGA
LOC_Os08g07950
OsAffx.16887.1.S1_at--972--1111Chr08:4489177..4489201 (25 bp)
AGTGACTACATTCGGTTCAACACCA
LOC_Os08g07950
OsAffx.16887.1.S1_at--531--10511Chr08:4489192..4489216 (25 bp)
TTCAACACCATCTCTGCACATTTTT
LOC_Os08g07950
Target Sequence 
GACAACACTACAGCTTTTCACTATTACAAAGTTGATGTGTTTAATGTTGCAATTGATCAACAAATGATTGAGCTAGAAGA
CCGATTCGGTTCTCAAGCTACAGATCTGTTAGCCCTGTGTGTTTGCTTGGAGTCAAGACTTGAGTCATTTGACATGGCAA
AGTGTCAACTGCAACTACAGAGAGCTTTTTCAGCTATGAAAATTGTGAAGACACGTCTTCGAAATAAAATGGGAGACGGC
TACCCATCACATCACATCCAAGAGTTGGTGCATCTCAACAAGAGATCCTTCACTAGCATACCCATGAAGCAGAGTACCGT
ATGTAGCACTATTAGGCTTGTGGCCCCTCTTGACCATAGAATCAAAGATCTTTCTAGCTTCCATGGATCTTCCATTCTTG
CAGAGATAGTCCATGAGCATGTTATAAGTGACTACATTCGGTTCAACACCATCTCTGCACATTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16887.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis