Browse Element(s) Details


OsAffx.16940.1.S1_at

Description tigr:9636.m01045
TID=OsAffx.16940.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1080011/11hypothetical protein
LOC_Os02g273701/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g10770NANA8+6322550..6327493retrotransposon protein, putative, unclassified, expressed
LOC_Os08g10780Os.52707.1.S1_at10/118+6327947..6333275BED zinc finger family protein, expressed
LOC_Os08g10790OsAffx.828.1.S1_x_at1/118+6348644..6349823retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g10800OsAffx.16940.2.S1_s_at11/118+6352433..6352978hypothetical protein
LOC_Os08g10800OsAffx.16940.1.S1_at11/118+6352433..6352978hypothetical protein
LOC_Os08g10810NANA8+6359655..6362183hypothetical protein
LOC_Os08g10820OsAffx.16941.1.S1_at11/118+6365310..6365803hypothetical protein
LOC_Os08g10830Os.53142.1.S1_at1/118+6368348..6371095retrotransposon protein, putative, unclassified
LOC_Os08g10840Os.53142.1.S1_at1/118+6376325..6377192transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16940.1.S1_at--553--1311Chr08:6352879..6352903 (25 bp)
AGAGGAGGACCATGCGAACACGTAG
LOC_Os08g10800
OsAffx.16940.1.S1_at--855--2472Chr08:13470573..13470597 (25 bp)
AACACGTAGGTGTCCGCGCTGATGA
NONE
OsAffx.16940.1.S1_at--844--7452Chr11:13027537..13027587 (25 bp)
GTGTCCGCGCTGATGAACAAGCTAC
NONE
OsAffx.16940.1.S1_at--118--2711Chr08:6352836..6352860 (25 bp)
AAGCTACAGCTACAGCGGTGGTCTG
LOC_Os08g10800
OsAffx.16940.1.S1_at--1080--3953Chr08:13470602..13470625 (24 bp)
CGGTGGTCTGTAGCTCGCGAAAAAC
NONE
OsAffx.16940.1.S1_at--68--2413Chr02:16128996..16129020 (25 bp)
AAACAAGCTACAGCGGCGGTGGTTC
NONE
OsAffx.16940.1.S1_at--649--7674Chr08:13470716..13470740 (25 bp)
GGGTATGCAGTGTCTCACCGTGCAG
NONE
OsAffx.16940.1.S1_at--707--7454Chr08:13470725..13470749 (25 bp)
GTGTCTCACCGTGCAGCTGAAAGGG
NONE
OsAffx.16940.1.S1_at--817--651Chr08:6352621..6352645 (25 bp)
ATGAACACGATGAGGACCCGAGAAC
LOC_Os08g10800
OsAffx.16940.1.S1_at--12--9852Chr02:16129279..16129298 (20 bp)
TAAAGGATCTGGAGCTCACCGGACA
LOC_Os02g27370
OsAffx.16940.1.S1_at--298--2471Chr08:6352486..6352510 (25 bp)
AACAAAGCCAACGTGTCTAGATCGG
LOC_Os08g10800
Target Sequence 
AGAGGAGGACCATGCGAACACGTAGGTGTCCGCGCTGATGAACAAGCTACAGCTACAGCGGTGGTCTGTAGCTCGCGAAA
AACAAGCTACAGCGGCGGTGGTTCTTGGGGTATGCAGTGTCTCACCGTGCAGCTGAAAGGGGTCGGAGAGGTCCAGGAAG
CATCGACGGCGTTGGAGATGCCCGGCAACACAATGAACACGATGAGGACCCGAGAACGACTAGATCTGGCCATAAAAACC
CCAAATAAACGCTTGAATGAGCTAGAACATTGCATGCAGAGTCTTTTTGGCCAAGGTAAAGGATCTGGAGCTCACCGGAC
AGGGAGGAACAAAGCCAACGTGTCTAGATCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16940.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis