Browse Element(s) Details


OsAffx.16974.1.S1_at

Description tigr:9636.m01300
TID=OsAffx.16974.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=BTBPOZ domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1318011/11BTB/POZ domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g13150Os.26886.3.S1_x_at5/118+7802865..7809053transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g13160OsAffx.5799.1.S1_at11/118+7813633..7814305hypothetical protein
LOC_Os08g13170NANA8+7818798..7826235retrotransposon protein, putative, unclassified
LOC_Os08g13180OsAffx.16974.1.S1_at11/118+7828453..7829607BTB/POZ domain containing protein
LOC_Os08g13190Os.49232.1.S1_x_at2/118+7834691..7837635retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g13190Os.45982.1.A1_at1/118+7834691..7837635retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g13190OsAffx.18435.1.S1_x_at1/118+7834691..7837635retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g13200NANA8+7839612..7840385hypothetical protein
LOC_Os08g13210OsAffx.24284.5.A1_at1/118+7848746..7851377hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16974.1.S1_at--243--731Chr08:7829069..7829093 (25 bp)
ATGTCGGAGCCGACTTGAGCTTCGA
LOC_Os08g13180
OsAffx.16974.1.S1_at--592--10851Chr08:7829096..7829120 (25 bp)
TTGGAGGAGATGTTTTCCCCGCTCA
LOC_Os08g13180
OsAffx.16974.1.S1_at--591--9991Chr08:7829132..7829156 (25 bp)
TAGCGGCGCGATCACCGGTGTTCAT
LOC_Os08g13180
OsAffx.16974.1.S1_at--1023--5131Chr08:7829217..7829241 (25 bp)
GCAACCTGTTGTGTTCAAGGCTCTA
LOC_Os08g13180
OsAffx.16974.1.S1_at--903--3551Chr08:7829245..7829269 (25 bp)
CATTTTATGTACACGGACTCCTTCT
LOC_Os08g13180
OsAffx.16974.1.S1_at--186--9251Chr08:7829263..7829287 (25 bp)
TCCTTCTCTCCTGCTATTAATGATG
LOC_Os08g13180
OsAffx.16974.1.S1_at--437--8251Chr08:7829382..7829406 (25 bp)
GGCACTCTGCATGAGTCTTAGTGTT
LOC_Os08g13180
OsAffx.16974.1.S1_at--838--2231Chr08:7829419..7829443 (25 bp)
ACAATTGTTGCCCTAGCTGATCAGC
LOC_Os08g13180
OsAffx.16974.1.S1_at--700--7471Chr08:7829469..7829493 (25 bp)
GTGTGTTAAATTTATCGCCTCATCA
LOC_Os08g13180
OsAffx.16974.1.S1_at--878--1391Chr08:7829516..7829540 (25 bp)
AGACTGAAGGGTATGGTCGCCTCAA
LOC_Os08g13180
OsAffx.16974.1.S1_at--301--10711Chr08:7829547..7829571 (25 bp)
TTGCCCTTCTATCCTACTGGATGTA
LOC_Os08g13180
Target Sequence 
ATGTCGGAGCCGACTTGAGCTTCGAGGTTGGAGGAGATGTTTTCCCCGCTCATAGCGTGGTGCTAGCGGCGCGATCACCG
GTGTTCATGGCGGAGCTTTACGGGCCGATGAGGGCCAAGAGAGGAGAGCGGATAGCCATCCAGGATATGCAACCTGTTGT
GTTCAAGGCTCTACTTCATTTTATGTACACGGACTCCTTCTCTCCTGCTATTAATGATGATCTCAGTAGAGATGAAAGGC
AGGAGTTGGCTAAGCATCTGCTTGTAGCTGCAGATCGTTATGCTGTGGAAGGATTGAAAACCATTTGTGAAAAGGCACTC
TGCATGAGTCTTAGTGTTGATAATGTGGCAACAATTGTTGCCCTAGCTGATCAGCACAATTGCGGAAGATTAAAAGAAGC
GTGTGTTAAATTTATCGCCTCATCAAATAGATTGGATGATGTTGTGGAGACTGAAGGGTATGGTCGCCTCAAAACATCTT
GCCCTTCTATCCTACTGGATGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16974.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis