Browse Element(s) Details


OsAffx.5799.1.S1_at

Description tigr:9636.m01298
TID=OsAffx.5799.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1316011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g13130OsAffx.29174.1.S1_at11/118+7791882..7796733hypothetical protein
LOC_Os08g13140Os.26886.2.S1_s_at7/118+7802214..7802666hypothetical protein
LOC_Os08g13140Os.26886.6.S1_s_at4/118+7802214..7802666hypothetical protein
LOC_Os08g13150Os.26886.3.S1_x_at5/118+7802865..7809053transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g13160OsAffx.5799.1.S1_at11/118+7813633..7814305hypothetical protein
LOC_Os08g13170NANA8+7818798..7826235retrotransposon protein, putative, unclassified
LOC_Os08g13180OsAffx.16974.1.S1_at11/118+7828453..7829607BTB/POZ domain containing protein
LOC_Os08g13190Os.49232.1.S1_x_at2/118+7834691..7837635retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g13190Os.45982.1.A1_at1/118+7834691..7837635retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g13190OsAffx.18435.1.S1_x_at1/118+7834691..7837635retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5799.1.S1_at--452--1311Chr08:7814175..7814199 (25 bp)
AGATGTACATGGAGCCAGTAACGGC
LOC_Os08g13160
OsAffx.5799.1.S1_at--880--8531Chr08:7814184..7814208 (25 bp)
TGGAGCCAGTAACGGCCAAGCACAT
LOC_Os08g13160
OsAffx.5799.1.S1_at--245--4351Chr08:7814189..7814213 (25 bp)
CCAGTAACGGCCAAGCACATGCGGT
LOC_Os08g13160
OsAffx.5799.1.S1_at--1077--3231Chr08:7814200..7814224 (25 bp)
CAAGCACATGCGGTTTCACAAGGAG
LOC_Os08g13160
OsAffx.5799.1.S1_at--287--5111Chr08:7814203..7814227 (25 bp)
GCACATGCGGTTTCACAAGGAGAGT
LOC_Os08g13160
OsAffx.5799.1.S1_at--637--611Chr08:7814207..7814231 (25 bp)
ATGCGGTTTCACAAGGAGAGTGCTT
LOC_Os08g13160
OsAffx.5799.1.S1_at--1075--6011Chr08:7814222..7814246 (25 bp)
GAGAGTGCTTGTGATAATCCTGATA
LOC_Os08g13160
OsAffx.5799.1.S1_at--995--9751Chr08:7814236..7814260 (25 bp)
TAATCCTGATATTGTGGTCCACCCA
LOC_Os08g13160
OsAffx.5799.1.S1_at--772--10231Chr08:7814245..7814269 (25 bp)
TATTGTGGTCCACCCATTTTATGGC
LOC_Os08g13160
OsAffx.5799.1.S1_at--18--8671Chr08:7814248..7814272 (25 bp)
TGTGGTCCACCCATTTTATGGCGAA
LOC_Os08g13160
OsAffx.5799.1.S1_at--730--7791Chr08:7814251..7814275 (25 bp)
GGTCCACCCATTTTATGGCGAAGCA
LOC_Os08g13160
Target Sequence 
AGATGTACATGGAGCCAGTAACGGCCAAGCACATGCGGTTTCACAAGGAGAGTGCTTGTGATAATCCTGATATTGTGGTC
CACCCATTTTATGGCGAAGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5799.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis