Browse Element(s) Details


OsAffx.17043.1.S1_at

Description tigr:9636.m01743
TID=OsAffx.17043.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Protein kinase domain
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1732011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g17294OsAffx.29248.3.S1_s_at11/118+10559024..10571664Partner of SLD five, PSF3 family protein, expressed
LOC_Os08g17294OsAffx.29248.2.S1_at11/118+10559024..10571664Partner of SLD five, PSF3 family protein, expressed
LOC_Os08g17294OsAffx.29248.3.S1_x_at11/118+10559024..10571664Partner of SLD five, PSF3 family protein, expressed
LOC_Os08g17294Os.18102.1.A1_at10/118+10559024..10571664Partner of SLD five, PSF3 family protein, expressed
LOC_Os08g17320OsAffx.17043.1.S1_at11/118+10584678..10586585Protein kinase domain containing protein, expressed
LOC_Os08g17330OsAffx.5853.1.S1_at9/118+10596806..10598596hypothetical protein
LOC_Os08g17330OsAffx.29554.1.S1_at1/118+10596806..10598596hypothetical protein
LOC_Os08g17340OsAffx.10637.1.S1_s_at1/118+10602559..10603551hypothetical protein
LOC_Os08g17350OsAffx.5854.1.S1_at11/118+10606749..10607331hypothetical protein
LOC_Os08g17360NANA8+10608681..10609039hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0004672molecular_functionprotein kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17043.1.S1_at--634--4091Chr08:10585990..10586014 (25 bp)
CGACGAGCGGCCTGGACATCAGCAG
LOC_Os08g17320
OsAffx.17043.1.S1_at--186--8531Chr08:10586002..10586026 (25 bp)
TGGACATCAGCAGCTTCAGGAGGAA
LOC_Os08g17320
OsAffx.17043.1.S1_at--464--3931Chr08:10586066..10586090 (25 bp)
CGGCGACATGCACAGCGGCGACTTC
LOC_Os08g17320
OsAffx.17043.1.S1_at--563--10671Chr08:10586088..10586112 (25 bp)
TTCCTCAGCCGGGAGCTGAGCACGA
LOC_Os08g17320
OsAffx.17043.1.S1_at--1112--3892Chr08:10586283..10586307 (25 bp)
CTGGAGAAGGCCAACCTGGTGAGCT
LOC_Os08g17320
OsAffx.17043.1.S1_at--980--4371Chr08:10586293..10586317 (25 bp)
CCAACCTGGTGAGCTGGTGCCGGCA
LOC_Os08g17320
OsAffx.17043.1.S1_at--99--4271Chr08:10586329..10586353 (25 bp)
CCGGCAACGTGCTCGAGCTAATGGA
LOC_Os08g17320
OsAffx.17043.1.S1_at--908--8511Chr08:10586362..10586386 (25 bp)
TGGACGGCGGCTACGACAAGGACCA
LOC_Os08g17320
OsAffx.17043.1.S1_at--776--4851Chr08:10586371..10586395 (25 bp)
GCTACGACAAGGACCAGGCCACGCT
LOC_Os08g17320
OsAffx.17043.1.S1_at--438--9491Chr08:10586395..10586419 (25 bp)
TCTGCGTGCAGCTCGCGCTGCTCTG
LOC_Os08g17320
OsAffx.17043.1.S1_at--1017--8411Chr08:10586443..10586467 (25 bp)
GGCCGGACAGCACGGACATCGTCAA
LOC_Os08g17320
Target Sequence 
CGACGAGCGGCCTGGACATCAGCAGCTTCAGGAGGAACCGGAAGCGGAGCCGGCGGCGTGGGCGGTCCGTGGGCAGCGGC
GACATGCACAGCGGCGACTTCCTCAGCCGGGAGCTGAGCACGACGACGAGCATGCGCGGCACGGTGTGCTACGTGGCGCC
GGAGTGCGGCGGCGGGCCGTGCGAGCACGGCGCCGAGCTGCTCGAGAAGGCCGACATCTACAGCTTCGGCGTGCTCGCCC
TGGTCATCCTGTCCGGCAGGCGGCCGCTGCACATCCTCTCGTCGCCGATGAAGCTGGAGAAGGCCAACCTGGTGAGCTGG
TGCCGGCAGCTCGCGCGCGCCGGCAACGTGCTCGAGCTAATGGACGAGAGGCTGGACGGCGGCTACGACAAGGACCAGGC
CACGCTCTGCGTGCAGCTCGCGCTGCTCTGCCTGCAGCGGCAGCCGGAGCAACGGCCGGACAGCACGGACATCGTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17043.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis