Browse Element(s) Details


Os.18102.1.A1_at

Description gb:AK120575.1
DB_XREF= gi:37990198
TID=Os.18102.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18102 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-026-A02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013134L17, full insert sequence.
FL= gb:AK059326.1 gb:AK120575.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1729410/11Partner of SLD five, PSF3 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g17200NANA8+10532145..10535134hypothetical protein
LOC_Os08g17210OsAffx.16467.1.S1_at9/118+10536547..10539632transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g17210Os.26886.2.S1_s_at8/118+10536547..10539632transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g17210Os.26886.6.S1_s_at8/118+10536547..10539632transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g17220NANA8+10540185..10540709hypothetical protein
LOC_Os08g17230Os.26886.1.S1_x_at8/118+10542558..10545448transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g17230Os.26886.3.S1_x_at5/118+10542558..10545448transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g17240OsAffx.15648.1.S1_at1/118+10548266..10550175Zinc knuckle family protein
LOC_Os08g17250NANA8+10551321..10552016hypothetical protein
LOC_Os08g17259NANA8+10555029..10555852hypothetical protein
LOC_Os08g17270OsAffx.5851.1.S1_at11/118+10557821..10558236hypothetical protein
LOC_Os08g17294OsAffx.29248.3.S1_s_at11/118+10559024..10571664Partner of SLD five, PSF3 family protein, expressed
LOC_Os08g17294OsAffx.29248.2.S1_at11/118+10559024..10571664Partner of SLD five, PSF3 family protein, expressed
LOC_Os08g17294OsAffx.29248.3.S1_x_at11/118+10559024..10571664Partner of SLD five, PSF3 family protein, expressed
LOC_Os08g17294Os.18102.1.A1_at10/118+10559024..10571664Partner of SLD five, PSF3 family protein, expressed
LOC_Os08g17320OsAffx.17043.1.S1_at11/118+10584678..10586585Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18102.1.A1_at--591--2811NONE
AAGATAGTCCCTTTGGTGAACGACA
NONE
Os.18102.1.A1_at--893--971Chr08:10571054..10571078 (25 bp)
AGGAGCATTGGACTGTTCTTGCGCT
LOC_Os08g17294
Os.18102.1.A1_at--945--6731Chr08:10571068..10571092 (25 bp)
GTTCTTGCGCTATGCATTCACTAGT
LOC_Os08g17294
Os.18102.1.A1_at--678--3291Chr08:10571118..10571142 (25 bp)
CACACAGCTCTTCCATGATGACAGT
LOC_Os08g17294
Os.18102.1.A1_at--707--6311Chr08:10571134..10571158 (25 bp)
GATGACAGTGCCCAAGTTTGTTCCG
LOC_Os08g17294
Os.18102.1.A1_at--940--10751Chr08:10571151..10571175 (25 bp)
TTGTTCCGCGCCTTACAAAAGAAGA
LOC_Os08g17294
Os.18102.1.A1_at--186--5411Chr08:10571174..10571311 (25 bp)
GAAGCTCAAGTGTTCGAATCTGCTA
LOC_Os08g17294
Os.18102.1.A1_at--727--3051Chr08:10571303..10571327 (25 bp)
AATCTGCTAGGGACTCGATGACCGC
LOC_Os08g17294
Os.18102.1.A1_at--166--5831Chr08:10571322..10571346 (25 bp)
GACCGCTTTCAAGAAGTGGCGCGCT
LOC_Os08g17294
Os.18102.1.A1_at--248--6211Chr08:10571355..10571379 (25 bp)
GAGGCTGCAGAAAGCGTCCATTCTT
LOC_Os08g17294
Os.18102.1.A1_at--1066--71Chr08:10571526..10571550 (25 bp)
ATTCCGTTCGGAGATCACACGTTTG
LOC_Os08g17294
Target Sequence 
AAGATAGTCCCTTTGGTGAACGACAGGAGCATTGGACTGTTCTTGCGCTATGCATTCACTAGTAGGTACAAGGAGATACT
AAGCAAGTCACACAGCTCTTCCATGATGACAGTGCCCAAGTTTGTTCCGCGCCTTACAAAAGAAGAAGCTCAAGTGTTCG
AATCTGCTAGGGACTCGATGACCGCTTTCAAGAAGTGGCGCGCTGGCGGTGTGAGGCTGCAGAAAGCGTCCATTCTTGGT
AGGAAAAGGAAGACAAAACTGCCTGATGGACCTTNTGCACCTTGAACCATGTTTTAGGTTCTTCTGTATGGAAAATCGTA
CTTGAGCTGATGTATGTATACTTCATTAATATGTCGCTGTAAGAGAAGACCAAAAGTGAAACAATTCCGTTCGGAGATCA
CACGTTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18102.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis