Browse Element(s) Details


OsAffx.29248.2.S1_at

Description tigr:9636.m01740
TID=OsAffx.29248.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Phosphatidylinositol 3- and 4-kinase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1729411/11Partner of SLD five, PSF3 family protein, expressed
LOC_Os05g512301/11phosphatidylinositol 3- and 4-kinase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g17200NANA8+10532145..10535134hypothetical protein
LOC_Os08g17210OsAffx.16467.1.S1_at9/118+10536547..10539632transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g17210Os.26886.2.S1_s_at8/118+10536547..10539632transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g17210Os.26886.6.S1_s_at8/118+10536547..10539632transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g17220NANA8+10540185..10540709hypothetical protein
LOC_Os08g17230Os.26886.1.S1_x_at8/118+10542558..10545448transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g17230Os.26886.3.S1_x_at5/118+10542558..10545448transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g17240OsAffx.15648.1.S1_at1/118+10548266..10550175Zinc knuckle family protein
LOC_Os08g17250NANA8+10551321..10552016hypothetical protein
LOC_Os08g17259NANA8+10555029..10555852hypothetical protein
LOC_Os08g17270OsAffx.5851.1.S1_at11/118+10557821..10558236hypothetical protein
LOC_Os08g17294OsAffx.29248.3.S1_s_at11/118+10559024..10571664Partner of SLD five, PSF3 family protein, expressed
LOC_Os08g17294OsAffx.29248.2.S1_at11/118+10559024..10571664Partner of SLD five, PSF3 family protein, expressed
LOC_Os08g17294OsAffx.29248.3.S1_x_at11/118+10559024..10571664Partner of SLD five, PSF3 family protein, expressed
LOC_Os08g17294Os.18102.1.A1_at10/118+10559024..10571664Partner of SLD five, PSF3 family protein, expressed
LOC_Os08g17320OsAffx.17043.1.S1_at11/118+10584678..10586585Protein kinase domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006512biological_processubiquitin cycle
GO:0004428molecular_functioninositol or phosphatidylinositol kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29248.2.S1_at--284--10672Chr08:10562946..10563090 (25 bp)
TTCCTGAGAGTCCGCAGTGTCGGGA
LOC_Os08g17294
OsAffx.29248.2.S1_at--869--7551Chr08:10563285..10563309 (25 bp)
GGGCCAGGCAGTCCCGGGAGTGGAG
LOC_Os08g17294
OsAffx.29248.2.S1_at--1154--4051Chr08:10563317..10563341 (25 bp)
CGATGGCGAGGCCAGCACTCGGCGA
LOC_Os08g17294
OsAffx.29248.2.S1_at--423--8711Chr08:10563382..10563406 (25 bp)
TGTCCTTGGCATCGTCGATGGCCCA
LOC_Os08g17294
OsAffx.29248.2.S1_at--886--8271Chr08:10563389..10563413 (25 bp)
GGCATCGTCGATGGCCCACGACGGA
LOC_Os08g17294
OsAffx.29248.2.S1_at--930--991Chr08:10563419..10563443 (25 bp)
AGGTTGAAGGCAGCGGCCCACGCAC
LOC_Os08g17294
OsAffx.29248.2.S1_at--752--9311Chr08:10563453..10563477 (25 bp)
TCGCCGGCCAACACGGAGGAGCCAG
LOC_Os08g17294
OsAffx.29248.2.S1_at--615--4391Chr08:10563459..10563483 (25 bp)
GCCAACACGGAGGAGCCAGTGTCGT
LOC_Os08g17294
OsAffx.29248.2.S1_at--931--2171Chr08:10563463..10563487 (25 bp)
ACACGGAGGAGCCAGTGTCGTCCTT
LOC_Os08g17294
OsAffx.29248.2.S1_at--872--8011Chr08:10563467..10563491 (25 bp)
GGAGGAGCCAGTGTCGTCCTTGTTC
LOC_Os08g17294
OsAffx.29248.2.S1_at--756--5851Chr08:10563471..10563495 (25 bp)
GAGCCAGTGTCGTCCTTGTTCGCCG
LOC_Os08g17294
Target Sequence 
TTCCTGAGAGTCCGCAGTGTCGGGAGCCATTCAGCGAGGAGACGGTGGAGTACATAAGGTCACTGGACGCCGAGGAGGAC
ATCGCCATTCTGAGGTTCCATGGCTGGGAGATGCCAGCCAAGTGCGAGCGCGTCCTGCGCGTCACCACCATGCTGCTCAA
GAAAGGCGTGGACACGGGCCTCGCCGCGTTCGACGTGGGGAGCATCGTGTGCAGGGATGGGGCCAGGCAGTCCCGGGAGT
GGAGGAGTCGACGATGGCGAGGCCAGCACTCGGCGAGATGGGGTCAGCGTCGTGGAGGAAGTCGACCGGCGGGGGTTGTC
CTTGGCATCGTCGATGGCCCACGACGGAGGCGGAGGTTGAAGGCAGCGGCCCACGCACTAGCCTCGCTCGCCGGCCAACA
CGGAGGAGCCAGTGTCGTCCTTGTTCGCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29248.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis